miRNA display CGI


Results 21 - 34 of 34 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 + 112481 0.69 0.901857
Target:  5'- -cCAUACCugcgGGCgAGCAUCGGGUCa -3'
miRNA:   3'- ucGUGUGG----UCG-UCGUAGUCCAG- -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 - 2103 0.69 0.901857
Target:  5'- cAGCGcCACUAGCAGCAgguucucagcaaUCAGGg- -3'
miRNA:   3'- -UCGU-GUGGUCGUCGU------------AGUCCag -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 + 4331 0.7 0.87973
Target:  5'- gGGCAguCCAGCAGCu---GGUCa -3'
miRNA:   3'- -UCGUguGGUCGUCGuaguCCAG- -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 - 134706 0.7 0.871814
Target:  5'- uGCGCGCCGcCAGCAUggcagcCGGGUCg -3'
miRNA:   3'- uCGUGUGGUcGUCGUA------GUCCAG- -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 + 171156 0.71 0.846545
Target:  5'- cGGCGgGCgGGCGGCGggGGGUCg -3'
miRNA:   3'- -UCGUgUGgUCGUCGUagUCCAG- -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 + 169559 0.71 0.846545
Target:  5'- cGGCGgGCgGGCGGCGggGGGUCg -3'
miRNA:   3'- -UCGUgUGgUCGUCGUagUCCAG- -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 + 170096 0.71 0.846545
Target:  5'- cGGCGgGCgGGCGGCGggGGGUCg -3'
miRNA:   3'- -UCGUgUGgUCGUCGUagUCCAG- -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 + 170619 0.71 0.846545
Target:  5'- cGGCGgGCgGGCGGCGggGGGUCg -3'
miRNA:   3'- -UCGUgUGgUCGUCGUagUCCAG- -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 - 76450 0.71 0.837642
Target:  5'- aAGCGCcgGCCGGCAGCAccCcGGUCa -3'
miRNA:   3'- -UCGUG--UGGUCGUCGUa-GuCCAG- -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 + 77136 0.72 0.779849
Target:  5'- aGGCGCaguccgccaugACCAGCAGCAgcagaaGGGUCa -3'
miRNA:   3'- -UCGUG-----------UGGUCGUCGUag----UCCAG- -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 + 68075 0.73 0.705367
Target:  5'- gGGCACGCCAGCAagGC-UCAGG-Cg -3'
miRNA:   3'- -UCGUGUGGUCGU--CGuAGUCCaG- -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 - 77788 0.75 0.604747
Target:  5'- aGGCAcCACCAGCcaAGCGUCAGGcCc -3'
miRNA:   3'- -UCGU-GUGGUCG--UCGUAGUCCaG- -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 + 44969 0.77 0.49533
Target:  5'- uGGCACAuCCAGCAGCGUguuuUGGGUCu -3'
miRNA:   3'- -UCGUGU-GGUCGUCGUA----GUCCAG- -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 - 139282 1.02 0.015826
Target:  5'- cAGCACACCAGCAGCAUCAGGUCc -3'
miRNA:   3'- -UCGUGUGGUCGUCGUAGUCCAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.