miRNA display CGI


Results 1 - 6 of 6 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003413 ebv-miR-BART5 -48.5 NC_007605.1 + 109497 0.66 0.997342
Target:  5'- aGAUGGG-AGCUGgcucaaaCACCUUGg -3'
miRNA:   3'- gCUACCCgUCGAUauaa---GUGGAAC- -5'
MIMAT0003413 ebv-miR-BART5 -48.5 NC_007605.1 - 101472 0.67 0.994759
Target:  5'- ---gGGGCAGCUAUGgacCACCa-- -3'
miRNA:   3'- gcuaCCCGUCGAUAUaa-GUGGaac -5'
MIMAT0003413 ebv-miR-BART5 -48.5 NC_007605.1 - 147935 0.69 0.970893
Target:  5'- uGAUGGGCGGgUGUuaggUCACCa-- -3'
miRNA:   3'- gCUACCCGUCgAUAua--AGUGGaac -5'
MIMAT0003413 ebv-miR-BART5 -48.5 NC_007605.1 - 154717 0.7 0.967641
Target:  5'- aCGAUGGGCAGCagauccgcGUGUUCuCCUg- -3'
miRNA:   3'- -GCUACCCGUCGa-------UAUAAGuGGAac -5'
MIMAT0003413 ebv-miR-BART5 -48.5 NC_007605.1 + 139575 0.72 0.893707
Target:  5'- cCGGUGGGCcGCUGU--UCACCUa- -3'
miRNA:   3'- -GCUACCCGuCGAUAuaAGUGGAac -5'
MIMAT0003413 ebv-miR-BART5 -48.5 NC_007605.1 - 139731 1.02 0.028584
Target:  5'- uCGAUGGGCAGCUAUAUUCACCUUGa -3'
miRNA:   3'- -GCUACCCGUCGAUAUAAGUGGAAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.