miRNA display CGI


Results 1 - 20 of 52 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 744 0.68 0.997631
Target:  5'- gGGGCCUA-GGuacucUUGGugCAGCCc -3'
miRNA:   3'- -UUCGGAUaCCu----AACCugGUUGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 2934 0.67 0.999577
Target:  5'- cAGCC-AUGGAgcGGACUGACg -3'
miRNA:   3'- uUCGGaUACCUaaCCUGGUUGg -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 14536 0.67 0.998944
Target:  5'- cAAGCCUAggGGAgaccgaagUgaaggcccUGGACCAACCc -3'
miRNA:   3'- -UUCGGAUa-CCU--------A--------ACCUGGUUGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 17605 0.67 0.998944
Target:  5'- cAAGCCUAggGGAgaccgaagUgaaggcccUGGACCAACCc -3'
miRNA:   3'- -UUCGGAUa-CCU--------A--------ACCUGGUUGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 20674 0.67 0.998944
Target:  5'- cAAGCCUAggGGAgaccgaagUgaaggcccUGGACCAACCc -3'
miRNA:   3'- -UUCGGAUa-CCU--------A--------ACCUGGUUGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 23743 0.67 0.998944
Target:  5'- cAAGCCUAggGGAgaccgaagUgaaggcccUGGACCAACCc -3'
miRNA:   3'- -UUCGGAUa-CCU--------A--------ACCUGGUUGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 26812 0.67 0.998944
Target:  5'- cAAGCCUAggGGAgaccgaagUgaaggcccUGGACCAACCc -3'
miRNA:   3'- -UUCGGAUa-CCU--------A--------ACCUGGUUGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 29881 0.67 0.998944
Target:  5'- cAAGCCUAggGGAgaccgaagUgaaggcccUGGACCAACCc -3'
miRNA:   3'- -UUCGGAUa-CCU--------A--------ACCUGGUUGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 32949 0.67 0.998944
Target:  5'- cAAGCCUAggGGAgaccgaagUgaaggcccUGGACCAACCc -3'
miRNA:   3'- -UUCGGAUa-CCU--------A--------ACCUGGUUGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 37273 0.67 0.999151
Target:  5'- cAAGCCcgGUGGAccUUGGAgaCCAgaGCCa -3'
miRNA:   3'- -UUCGGa-UACCU--AACCU--GGU--UGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 38303 0.69 0.994305
Target:  5'- cGGCCgccgGUGGGUccgcUGGGCCGcuGCCc -3'
miRNA:   3'- uUCGGa---UACCUA----ACCUGGU--UGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 38428 0.69 0.994305
Target:  5'- cGGCCgccgGUGGGUccgcUGGGCCGcuGCCc -3'
miRNA:   3'- uUCGGa---UACCUA----ACCUGGU--UGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 38553 0.69 0.994305
Target:  5'- cGGCCgccgGUGGGUccgcUGGGCCGcuGCCc -3'
miRNA:   3'- uUCGGa---UACCUA----ACCUGGU--UGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 38678 0.69 0.994305
Target:  5'- cGGCCgccgGUGGGUccgcUGGGCCGcuGCCc -3'
miRNA:   3'- uUCGGa---UACCUA----ACCUGGU--UGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 38803 0.69 0.994305
Target:  5'- cGGCCgccgGUGGGUccgcUGGGCCGcuGCCc -3'
miRNA:   3'- uUCGGa---UACCUA----ACCUGGU--UGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 38927 0.69 0.994305
Target:  5'- cGGCCgccgGUGGGUccgcUGGGCCGcuGCCc -3'
miRNA:   3'- uUCGGa---UACCUA----ACCUGGU--UGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 39052 0.69 0.994305
Target:  5'- cGGCCgccgGUGGGUccgcUGGGCCGcuGCCc -3'
miRNA:   3'- uUCGGa---UACCUA----ACCUGGU--UGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 39177 0.69 0.994305
Target:  5'- cGGCCgccgGUGGGUccgcUGGGCCGcuGCCc -3'
miRNA:   3'- uUCGGa---UACCUA----ACCUGGU--UGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 39302 0.69 0.994305
Target:  5'- cGGCCgccgGUGGGUccgcUGGGCCGcuGCCc -3'
miRNA:   3'- uUCGGa---UACCUA----ACCUGGU--UGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 39427 0.69 0.994305
Target:  5'- cGGCCgccgGUGGGUccgcUGGGCCGcuGCCc -3'
miRNA:   3'- uUCGGa---UACCUA----ACCUGGU--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.