miRNA display CGI


Results 21 - 40 of 52 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 38303 0.69 0.994305
Target:  5'- cGGCCgccgGUGGGUccgcUGGGCCGcuGCCc -3'
miRNA:   3'- uUCGGa---UACCUA----ACCUGGU--UGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 40234 0.69 0.995169
Target:  5'- cAGGCCUAgGGGUccagGGGgCAGCCg -3'
miRNA:   3'- -UUCGGAUaCCUAa---CCUgGUUGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 - 82743 0.68 0.997145
Target:  5'- gGGGCCUGaGGGcaGGGCCuGCCa -3'
miRNA:   3'- -UUCGGAUaCCUaaCCUGGuUGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 744 0.68 0.997631
Target:  5'- gGGGCCUA-GGuacucUUGGugCAGCCc -3'
miRNA:   3'- -UUCGGAUaCCu----AACCugGUUGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 - 137282 0.68 0.997631
Target:  5'- -cGCCUcagGGAUcgUGGACuCGGCCa -3'
miRNA:   3'- uuCGGAua-CCUA--ACCUG-GUUGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 126442 0.68 0.998695
Target:  5'- cAGUCUAUucuuuacggacgGGGUggGGGCCAACCu -3'
miRNA:   3'- uUCGGAUA------------CCUAa-CCUGGUUGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 32949 0.67 0.998944
Target:  5'- cAAGCCUAggGGAgaccgaagUgaaggcccUGGACCAACCc -3'
miRNA:   3'- -UUCGGAUa-CCU--------A--------ACCUGGUUGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 29881 0.67 0.998944
Target:  5'- cAAGCCUAggGGAgaccgaagUgaaggcccUGGACCAACCc -3'
miRNA:   3'- -UUCGGAUa-CCU--------A--------ACCUGGUUGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 26812 0.67 0.998944
Target:  5'- cAAGCCUAggGGAgaccgaagUgaaggcccUGGACCAACCc -3'
miRNA:   3'- -UUCGGAUa-CCU--------A--------ACCUGGUUGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 23743 0.67 0.998944
Target:  5'- cAAGCCUAggGGAgaccgaagUgaaggcccUGGACCAACCc -3'
miRNA:   3'- -UUCGGAUa-CCU--------A--------ACCUGGUUGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 20674 0.67 0.998944
Target:  5'- cAAGCCUAggGGAgaccgaagUgaaggcccUGGACCAACCc -3'
miRNA:   3'- -UUCGGAUa-CCU--------A--------ACCUGGUUGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 17605 0.67 0.998944
Target:  5'- cAAGCCUAggGGAgaccgaagUgaaggcccUGGACCAACCc -3'
miRNA:   3'- -UUCGGAUa-CCU--------A--------ACCUGGUUGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 14536 0.67 0.998944
Target:  5'- cAAGCCUAggGGAgaccgaagUgaaggcccUGGACCAACCc -3'
miRNA:   3'- -UUCGGAUa-CCU--------A--------ACCUGGUUGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 37273 0.67 0.999151
Target:  5'- cAAGCCcgGUGGAccUUGGAgaCCAgaGCCa -3'
miRNA:   3'- -UUCGGa-UACCU--AACCU--GGU--UGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 - 114293 0.67 0.999322
Target:  5'- -uGCCUGUGGAgauuaGGGgUAACCc -3'
miRNA:   3'- uuCGGAUACCUaa---CCUgGUUGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 80470 0.67 0.999322
Target:  5'- uGGCCUAUGGGUU--ACCAGgCa -3'
miRNA:   3'- uUCGGAUACCUAAccUGGUUgG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 44658 0.67 0.999463
Target:  5'- aAGGCC-GUGGAUgcgcaGGACCAcguCCa -3'
miRNA:   3'- -UUCGGaUACCUAa----CCUGGUu--GG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 - 91378 0.67 0.999577
Target:  5'- cAGCCauaUGUGGAcagaUGGACCugAGCCa -3'
miRNA:   3'- uUCGG---AUACCUa---ACCUGG--UUGG- -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 2934 0.67 0.999577
Target:  5'- cAGCC-AUGGAgcGGACUGACg -3'
miRNA:   3'- uUCGGaUACCUaaCCUGGUUGg -5'
MIMAT0003414 ebv-miR-BART6-5p -45.8 NC_007605.1 + 59717 0.67 0.999577
Target:  5'- aGGGCCggcacgaggugGUGGGUcUGGACCcgGGCCg -3'
miRNA:   3'- -UUCGGa----------UACCUA-ACCUGG--UUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.