miRNA display CGI


Results 1 - 16 of 16 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003415 ebv-miR-BART6-3p -49.5 NC_007605.1 - 153052 0.67 0.987336
Target:  5'- --gAAGGCUGG-CaaaGAUCCCCa -3'
miRNA:   3'- agaUUCCGAUCaGg--CUAGGGGc -5'
MIMAT0003415 ebv-miR-BART6-3p -49.5 NC_007605.1 - 149638 0.69 0.95656
Target:  5'- --aAGGGCUAcGUCCGAgUCUCCGu -3'
miRNA:   3'- agaUUCCGAU-CAGGCU-AGGGGC- -5'
MIMAT0003415 ebv-miR-BART6-3p -49.5 NC_007605.1 - 140125 1.02 0.0215
Target:  5'- cUCUAAGGCUAGUCCGAUCCCCGg -3'
miRNA:   3'- -AGAUUCCGAUCAGGCUAGGGGC- -5'
MIMAT0003415 ebv-miR-BART6-3p -49.5 NC_007605.1 + 137080 0.66 0.994672
Target:  5'- aCUGuguGGCcgAGUCCacGAUCCCUGa -3'
miRNA:   3'- aGAUu--CCGa-UCAGG--CUAGGGGC- -5'
MIMAT0003415 ebv-miR-BART6-3p -49.5 NC_007605.1 + 120568 0.67 0.98892
Target:  5'- aCUGAGGCUc--CCGGUCCCa- -3'
miRNA:   3'- aGAUUCCGAucaGGCUAGGGgc -5'
MIMAT0003415 ebv-miR-BART6-3p -49.5 NC_007605.1 + 93142 0.66 0.992764
Target:  5'- cCUGGGGCUGGacgacagacUCUGggCCCUGa -3'
miRNA:   3'- aGAUUCCGAUC---------AGGCuaGGGGC- -5'
MIMAT0003415 ebv-miR-BART6-3p -49.5 NC_007605.1 + 60845 0.67 0.983032
Target:  5'- --gGGGGCgcAGUCCGAccgccuggggggacUCCCCGg -3'
miRNA:   3'- agaUUCCGa-UCAGGCU--------------AGGGGC- -5'
MIMAT0003415 ebv-miR-BART6-3p -49.5 NC_007605.1 + 33499 0.67 0.98892
Target:  5'- cUCUAAGGCccucgGGUCCcccuGGaCCCCGg -3'
miRNA:   3'- -AGAUUCCGa----UCAGG----CUaGGGGC- -5'
MIMAT0003415 ebv-miR-BART6-3p -49.5 NC_007605.1 + 30430 0.67 0.98892
Target:  5'- cUCUAAGGCccucgGGUCCcccuGGaCCCCGg -3'
miRNA:   3'- -AGAUUCCGa----UCAGG----CUaGGGGC- -5'
MIMAT0003415 ebv-miR-BART6-3p -49.5 NC_007605.1 + 27361 0.67 0.98892
Target:  5'- cUCUAAGGCccucgGGUCCcccuGGaCCCCGg -3'
miRNA:   3'- -AGAUUCCGa----UCAGG----CUaGGGGC- -5'
MIMAT0003415 ebv-miR-BART6-3p -49.5 NC_007605.1 + 24292 0.67 0.98892
Target:  5'- cUCUAAGGCccucgGGUCCcccuGGaCCCCGg -3'
miRNA:   3'- -AGAUUCCGa----UCAGG----CUaGGGGC- -5'
MIMAT0003415 ebv-miR-BART6-3p -49.5 NC_007605.1 + 21223 0.67 0.98892
Target:  5'- cUCUAAGGCccucgGGUCCcccuGGaCCCCGg -3'
miRNA:   3'- -AGAUUCCGa----UCAGG----CUaGGGGC- -5'
MIMAT0003415 ebv-miR-BART6-3p -49.5 NC_007605.1 + 18154 0.67 0.98892
Target:  5'- cUCUAAGGCccucgGGUCCcccuGGaCCCCGg -3'
miRNA:   3'- -AGAUUCCGa----UCAGG----CUaGGGGC- -5'
MIMAT0003415 ebv-miR-BART6-3p -49.5 NC_007605.1 + 17961 0.67 0.986305
Target:  5'- cCUGGGGCUAGUCUGGgugggauuaggcugCCUCa -3'
miRNA:   3'- aGAUUCCGAUCAGGCUa-------------GGGGc -5'
MIMAT0003415 ebv-miR-BART6-3p -49.5 NC_007605.1 + 15085 0.67 0.98892
Target:  5'- cUCUAAGGCccucgGGUCCcccuGGaCCCCGg -3'
miRNA:   3'- -AGAUUCCGa----UCAGG----CUaGGGGC- -5'
MIMAT0003415 ebv-miR-BART6-3p -49.5 NC_007605.1 + 12016 0.67 0.98892
Target:  5'- cUCUAAGGCccucgGGUCCcccuGGaCCCCGg -3'
miRNA:   3'- -AGAUUCCGa----UCAGG----CUaGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.