Results 1 - 20 of 27 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0003416 | ebv-miR-BART7 | -47.3 | NC_007605.1 | - | 146522 | 1.01 | 0.044261 |
Target: 5'- uCCCUGGACACUGGACUAUGAUGc -3' miRNA: 3'- -GGGACCUGUGACCUGAUACUAC- -5' |
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MIMAT0003416 | ebv-miR-BART7 | -47.3 | NC_007605.1 | + | 146291 | 0.68 | 0.994108 |
Target: 5'- aUCCUGGAC-CUuGACUAUGAa- -3' miRNA: 3'- -GGGACCUGuGAcCUGAUACUac -5' |
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MIMAT0003416 | ebv-miR-BART7 | -47.3 | NC_007605.1 | - | 125587 | 0.67 | 0.997916 |
Target: 5'- aCCCUGGGCACcgGGAg-GUGGg- -3' miRNA: 3'- -GGGACCUGUGa-CCUgaUACUac -5' |
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MIMAT0003416 | ebv-miR-BART7 | -47.3 | NC_007605.1 | - | 118283 | 0.73 | 0.914241 |
Target: 5'- uCUCUGGACACUGGugUuuGUGGg- -3' miRNA: 3'- -GGGACCUGUGACCugA--UACUac -5' |
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MIMAT0003416 | ebv-miR-BART7 | -47.3 | NC_007605.1 | + | 115045 | 0.67 | 0.998247 |
Target: 5'- gCCCUGGGCACucagcucUGGAUaUGUGAc- -3' miRNA: 3'- -GGGACCUGUG-------ACCUG-AUACUac -5' |
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MIMAT0003416 | ebv-miR-BART7 | -47.3 | NC_007605.1 | - | 113006 | 0.72 | 0.942961 |
Target: 5'- aUCUGGAC-CUGGACUggGGUGu -3' miRNA: 3'- gGGACCUGuGACCUGAuaCUAC- -5' |
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MIMAT0003416 | ebv-miR-BART7 | -47.3 | NC_007605.1 | - | 108465 | 0.66 | 0.999252 |
Target: 5'- aCCUUGGccggugGCugUGGACUggGGUGc -3' miRNA: 3'- -GGGACC------UGugACCUGAuaCUAC- -5' |
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MIMAT0003416 | ebv-miR-BART7 | -47.3 | NC_007605.1 | + | 99653 | 0.69 | 0.986017 |
Target: 5'- aCCCUGGGCcUUGG-CUAUGGUc -3' miRNA: 3'- -GGGACCUGuGACCuGAUACUAc -5' |
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MIMAT0003416 | ebv-miR-BART7 | -47.3 | NC_007605.1 | - | 73159 | 0.71 | 0.960777 |
Target: 5'- cCCCUGGuCGCUGGAggaaauCUAUGAc- -3' miRNA: 3'- -GGGACCuGUGACCU------GAUACUac -5' |
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MIMAT0003416 | ebv-miR-BART7 | -47.3 | NC_007605.1 | + | 72896 | 0.76 | 0.787604 |
Target: 5'- gCCCUGGACACUGGACc------ -3' miRNA: 3'- -GGGACCUGUGACCUGauacuac -5' |
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MIMAT0003416 | ebv-miR-BART7 | -47.3 | NC_007605.1 | - | 43570 | 0.73 | 0.914241 |
Target: 5'- gCCUUGGGgGcCUGGACUGUGGUa -3' miRNA: 3'- -GGGACCUgU-GACCUGAUACUAc -5' |
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MIMAT0003416 | ebv-miR-BART7 | -47.3 | NC_007605.1 | - | 35464 | 0.7 | 0.974317 |
Target: 5'- cCCCUGGACAuCUGGACa------ -3' miRNA: 3'- -GGGACCUGU-GACCUGauacuac -5' |
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MIMAT0003416 | ebv-miR-BART7 | -47.3 | NC_007605.1 | - | 35319 | 0.72 | 0.937798 |
Target: 5'- cCCCUGGACg--GGACUggGGUGg -3' miRNA: 3'- -GGGACCUGugaCCUGAuaCUAC- -5' |
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MIMAT0003416 | ebv-miR-BART7 | -47.3 | NC_007605.1 | - | 32395 | 0.7 | 0.974317 |
Target: 5'- cCCCUGGACAuCUGGACa------ -3' miRNA: 3'- -GGGACCUGU-GACCUGauacuac -5' |
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MIMAT0003416 | ebv-miR-BART7 | -47.3 | NC_007605.1 | - | 32250 | 0.72 | 0.937798 |
Target: 5'- cCCCUGGACg--GGACUggGGUGg -3' miRNA: 3'- -GGGACCUGugaCCUGAuaCUAC- -5' |
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MIMAT0003416 | ebv-miR-BART7 | -47.3 | NC_007605.1 | - | 29326 | 0.7 | 0.974317 |
Target: 5'- cCCCUGGACAuCUGGACa------ -3' miRNA: 3'- -GGGACCUGU-GACCUGauacuac -5' |
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MIMAT0003416 | ebv-miR-BART7 | -47.3 | NC_007605.1 | - | 29181 | 0.72 | 0.937798 |
Target: 5'- cCCCUGGACg--GGACUggGGUGg -3' miRNA: 3'- -GGGACCUGugaCCUGAuaCUAC- -5' |
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MIMAT0003416 | ebv-miR-BART7 | -47.3 | NC_007605.1 | - | 26257 | 0.7 | 0.974317 |
Target: 5'- cCCCUGGACAuCUGGACa------ -3' miRNA: 3'- -GGGACCUGU-GACCUGauacuac -5' |
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MIMAT0003416 | ebv-miR-BART7 | -47.3 | NC_007605.1 | - | 26113 | 0.72 | 0.937798 |
Target: 5'- cCCCUGGACg--GGACUggGGUGg -3' miRNA: 3'- -GGGACCUGugaCCUGAuaCUAC- -5' |
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MIMAT0003416 | ebv-miR-BART7 | -47.3 | NC_007605.1 | - | 23188 | 0.7 | 0.974317 |
Target: 5'- cCCCUGGACAuCUGGACa------ -3' miRNA: 3'- -GGGACCUGU-GACCUGauacuac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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