Results 21 - 27 of 27 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0003416 | ebv-miR-BART7 | -47.3 | NC_007605.1 | - | 19975 | 0.72 | 0.937798 |
Target: 5'- cCCCUGGACg--GGACUggGGUGg -3' miRNA: 3'- -GGGACCUGugaCCUGAuaCUAC- -5' |
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MIMAT0003416 | ebv-miR-BART7 | -47.3 | NC_007605.1 | - | 16906 | 0.72 | 0.937798 |
Target: 5'- cCCCUGGACg--GGACUggGGUGg -3' miRNA: 3'- -GGGACCUGugaCCUGAuaCUAC- -5' |
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MIMAT0003416 | ebv-miR-BART7 | -47.3 | NC_007605.1 | - | 13837 | 0.72 | 0.937798 |
Target: 5'- cCCCUGGACg--GGACUggGGUGg -3' miRNA: 3'- -GGGACCUGugaCCUGAuaCUAC- -5' |
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MIMAT0003416 | ebv-miR-BART7 | -47.3 | NC_007605.1 | - | 43570 | 0.73 | 0.914241 |
Target: 5'- gCCUUGGGgGcCUGGACUGUGGUa -3' miRNA: 3'- -GGGACCUgU-GACCUGAUACUAc -5' |
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MIMAT0003416 | ebv-miR-BART7 | -47.3 | NC_007605.1 | - | 118283 | 0.73 | 0.914241 |
Target: 5'- uCUCUGGACACUGGugUuuGUGGg- -3' miRNA: 3'- -GGGACCUGUGACCugA--UACUac -5' |
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MIMAT0003416 | ebv-miR-BART7 | -47.3 | NC_007605.1 | + | 72896 | 0.76 | 0.787604 |
Target: 5'- gCCCUGGACACUGGACc------ -3' miRNA: 3'- -GGGACCUGUGACCUGauacuac -5' |
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MIMAT0003416 | ebv-miR-BART7 | -47.3 | NC_007605.1 | - | 146522 | 1.01 | 0.044261 |
Target: 5'- uCCCUGGACACUGGACUAUGAUGc -3' miRNA: 3'- -GGGACCUGUGACCUGAUACUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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