miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003417 ebv-miR-BART8-5p -40.8 NC_007605.1 - 3560 0.67 1
Target:  5'- -aGUugAGUCcaccgaGGGGAACCGUGg -3'
miRNA:   3'- gaCAugUUAGa-----UCCUUUGGCAU- -5'
MIMAT0003417 ebv-miR-BART8-5p -40.8 NC_007605.1 + 61851 0.66 1
Target:  5'- aUG-ACcgAGUCUGGGAcGCCGUAa -3'
miRNA:   3'- gACaUG--UUAGAUCCUuUGGCAU- -5'
MIMAT0003417 ebv-miR-BART8-5p -40.8 NC_007605.1 - 61971 0.66 1
Target:  5'- gUGUGCAGgaggCggcGGGGAGCCGg- -3'
miRNA:   3'- gACAUGUUa---Ga--UCCUUUGGCau -5'
MIMAT0003417 ebv-miR-BART8-5p -40.8 NC_007605.1 - 76495 0.66 1
Target:  5'- cCUGggcuuCAGUCaGGGAAGCCGc- -3'
miRNA:   3'- -GACau---GUUAGaUCCUUUGGCau -5'
MIMAT0003417 ebv-miR-BART8-5p -40.8 NC_007605.1 - 79118 0.66 1
Target:  5'- cCUGUACGuguuuuacUCUGGGAaugGACCGa- -3'
miRNA:   3'- -GACAUGUu-------AGAUCCU---UUGGCau -5'
MIMAT0003417 ebv-miR-BART8-5p -40.8 NC_007605.1 - 93692 0.67 1
Target:  5'- -gGUGCAGaagCUGGGAGAUgGUGg -3'
miRNA:   3'- gaCAUGUUa--GAUCCUUUGgCAU- -5'
MIMAT0003417 ebv-miR-BART8-5p -40.8 NC_007605.1 + 99911 0.66 1
Target:  5'- gUGgagGCGuaGUCcAGGAGGCCGUGa -3'
miRNA:   3'- gACa--UGU--UAGaUCCUUUGGCAU- -5'
MIMAT0003417 ebv-miR-BART8-5p -40.8 NC_007605.1 - 146819 1.02 0.17344
Target:  5'- uCUGUACAAUCUAGGAAACCGUAa -3'
miRNA:   3'- -GACAUGUUAGAUCCUUUGGCAU- -5'
MIMAT0003417 ebv-miR-BART8-5p -40.8 NC_007605.1 - 164357 0.69 0.999999
Target:  5'- aUGUGgGA-CUGGGAGGCCGg- -3'
miRNA:   3'- gACAUgUUaGAUCCUUUGGCau -5'
MIMAT0003417 ebv-miR-BART8-5p -40.8 NC_007605.1 - 169720 0.75 0.998019
Target:  5'- uCUGUGCGGgggggCUGGGggGCCGc- -3'
miRNA:   3'- -GACAUGUUa----GAUCCuuUGGCau -5'
MIMAT0003417 ebv-miR-BART8-5p -40.8 NC_007605.1 - 170257 0.75 0.998019
Target:  5'- uCUGUGCGGgggggCUGGGggGCCGc- -3'
miRNA:   3'- -GACAUGUUa----GAUCCuuUGGCau -5'
MIMAT0003417 ebv-miR-BART8-5p -40.8 NC_007605.1 - 170780 0.75 0.998019
Target:  5'- uCUGUGCGGgggggCUGGGggGCCGc- -3'
miRNA:   3'- -GACAUGUUa----GAUCCuuUGGCau -5'
MIMAT0003417 ebv-miR-BART8-5p -40.8 NC_007605.1 - 171317 0.75 0.998019
Target:  5'- uCUGUGCGGgggggCUGGGggGCCGc- -3'
miRNA:   3'- -GACAUGUUa----GAUCCuuUGGCau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.