miRNA display CGI


Results 1 - 13 of 13 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003418 ebv-miR-BART8-3p -44.5 NC_007605.1 - 118742 0.66 0.999992
Target:  5'- -gACGGCCUCGgcggGGAacGUGACa -3'
miRNA:   3'- gaUGCUGGGGUa---UCUaaCACUG- -5'
MIMAT0003418 ebv-miR-BART8-3p -44.5 NC_007605.1 + 57997 0.66 0.999988
Target:  5'- -gGgGACCCCG-GGggUGUGACc -3'
miRNA:   3'- gaUgCUGGGGUaUCuaACACUG- -5'
MIMAT0003418 ebv-miR-BART8-3p -44.5 NC_007605.1 - 149567 0.66 0.999988
Target:  5'- -cAUGACCCUAUuGGAUgaUGUGAUu -3'
miRNA:   3'- gaUGCUGGGGUA-UCUA--ACACUG- -5'
MIMAT0003418 ebv-miR-BART8-3p -44.5 NC_007605.1 - 111053 0.66 0.999983
Target:  5'- -cACGAgCUCAUGGugUGUGACa -3'
miRNA:   3'- gaUGCUgGGGUAUCuaACACUG- -5'
MIMAT0003418 ebv-miR-BART8-3p -44.5 NC_007605.1 + 133 0.66 0.999976
Target:  5'- -cACGGCCUCAguUAGuaccGUUGUGACc -3'
miRNA:   3'- gaUGCUGGGGU--AUC----UAACACUG- -5'
MIMAT0003418 ebv-miR-BART8-3p -44.5 NC_007605.1 + 71254 0.66 0.999976
Target:  5'- cCUGcCGGCCCCucgAGAUUcUGACc -3'
miRNA:   3'- -GAU-GCUGGGGua-UCUAAcACUG- -5'
MIMAT0003418 ebv-miR-BART8-3p -44.5 NC_007605.1 + 116030 0.68 0.999662
Target:  5'- -cAgGGCCCCGUAGAcagucuuUUGUGAg -3'
miRNA:   3'- gaUgCUGGGGUAUCU-------AACACUg -5'
MIMAT0003418 ebv-miR-BART8-3p -44.5 NC_007605.1 - 155061 0.68 0.999577
Target:  5'- -gGCGACCCCAU-GAUgcgGGCa -3'
miRNA:   3'- gaUGCUGGGGUAuCUAacaCUG- -5'
MIMAT0003418 ebv-miR-BART8-3p -44.5 NC_007605.1 + 63069 0.69 0.999322
Target:  5'- gCUGCuGGCCCCGgGGGagGUGGCg -3'
miRNA:   3'- -GAUG-CUGGGGUaUCUaaCACUG- -5'
MIMAT0003418 ebv-miR-BART8-3p -44.5 NC_007605.1 - 155201 0.69 0.999322
Target:  5'- ---aGACCUCAgcguggAGAUUGUGACc -3'
miRNA:   3'- gaugCUGGGGUa-----UCUAACACUG- -5'
MIMAT0003418 ebv-miR-BART8-3p -44.5 NC_007605.1 + 41722 0.72 0.99332
Target:  5'- aUGCGACCCuCAUAGAgUUGUGuuuCa -3'
miRNA:   3'- gAUGCUGGG-GUAUCU-AACACu--G- -5'
MIMAT0003418 ebv-miR-BART8-3p -44.5 NC_007605.1 - 50841 0.72 0.99332
Target:  5'- gCUGCGACCCCGUGcgcccgugGUGGCc -3'
miRNA:   3'- -GAUGCUGGGGUAUcuaa----CACUG- -5'
MIMAT0003418 ebv-miR-BART8-3p -44.5 NC_007605.1 - 146854 1.04 0.056664
Target:  5'- uCUACGACCCCAUAGAUUGUGACa -3'
miRNA:   3'- -GAUGCUGGGGUAUCUAACACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.