miRNA display CGI


Results 1 - 19 of 19 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003419 ebv-miR-BART9 -45.2 NC_007605.1 + 40308 0.67 0.999853
Target:  5'- ---aGGGGCCCGgcgGggGUGggGg -3'
miRNA:   3'- gaugCCCUGGGUa--CuuCACaaU- -5'
MIMAT0003419 ebv-miR-BART9 -45.2 NC_007605.1 + 57994 0.74 0.953045
Target:  5'- -aGCgGGGACCCcgGggGUGUg- -3'
miRNA:   3'- gaUG-CCCUGGGuaCuuCACAau -5'
MIMAT0003419 ebv-miR-BART9 -45.2 NC_007605.1 + 71867 0.67 0.999889
Target:  5'- cCUGCGGGAUCCucguUGGAGg---- -3'
miRNA:   3'- -GAUGCCCUGGGu---ACUUCacaau -5'
MIMAT0003419 ebv-miR-BART9 -45.2 NC_007605.1 + 137563 0.72 0.986552
Target:  5'- cCUAUGGGGCCUGUGAcuggugcuuguGGUGUg- -3'
miRNA:   3'- -GAUGCCCUGGGUACU-----------UCACAau -5'
MIMAT0003419 ebv-miR-BART9 -45.2 NC_007605.1 - 4477 0.66 0.999967
Target:  5'- cCU-CGGGuGCCCGUGggGUcGUg- -3'
miRNA:   3'- -GAuGCCC-UGGGUACuuCA-CAau -5'
MIMAT0003419 ebv-miR-BART9 -45.2 NC_007605.1 - 14827 0.67 0.999749
Target:  5'- --cUGGGugUgGUGGAGUGUUGg -3'
miRNA:   3'- gauGCCCugGgUACUUCACAAU- -5'
MIMAT0003419 ebv-miR-BART9 -45.2 NC_007605.1 - 17896 0.67 0.999749
Target:  5'- --cUGGGugUgGUGGAGUGUUGg -3'
miRNA:   3'- gauGCCCugGgUACUUCACAAU- -5'
MIMAT0003419 ebv-miR-BART9 -45.2 NC_007605.1 - 20965 0.67 0.999749
Target:  5'- --cUGGGugUgGUGGAGUGUUGg -3'
miRNA:   3'- gauGCCCugGgUACUUCACAAU- -5'
MIMAT0003419 ebv-miR-BART9 -45.2 NC_007605.1 - 24034 0.67 0.999749
Target:  5'- --cUGGGugUgGUGGAGUGUUGg -3'
miRNA:   3'- gauGCCCugGgUACUUCACAAU- -5'
MIMAT0003419 ebv-miR-BART9 -45.2 NC_007605.1 - 27103 0.67 0.999749
Target:  5'- --cUGGGugUgGUGGAGUGUUGg -3'
miRNA:   3'- gauGCCCugGgUACUUCACAAU- -5'
MIMAT0003419 ebv-miR-BART9 -45.2 NC_007605.1 - 30171 0.67 0.999749
Target:  5'- --cUGGGugUgGUGGAGUGUUGg -3'
miRNA:   3'- gauGCCCugGgUACUUCACAAU- -5'
MIMAT0003419 ebv-miR-BART9 -45.2 NC_007605.1 - 33240 0.67 0.999749
Target:  5'- --cUGGGugUgGUGGAGUGUUGg -3'
miRNA:   3'- gauGCCCugGgUACUUCACAAU- -5'
MIMAT0003419 ebv-miR-BART9 -45.2 NC_007605.1 - 41508 0.69 0.998644
Target:  5'- -gGCGGGGCUCAUGGauuagcaggggcuuAGUGUg- -3'
miRNA:   3'- gaUGCCCUGGGUACU--------------UCACAau -5'
MIMAT0003419 ebv-miR-BART9 -45.2 NC_007605.1 - 81538 0.66 0.999954
Target:  5'- -cACGGGGCC-AUGccGUGUUGu -3'
miRNA:   3'- gaUGCCCUGGgUACuuCACAAU- -5'
MIMAT0003419 ebv-miR-BART9 -45.2 NC_007605.1 - 82587 0.66 0.999954
Target:  5'- --cCGGGAUgguuaagaCCAUGGAGUGUa- -3'
miRNA:   3'- gauGCCCUG--------GGUACUUCACAau -5'
MIMAT0003419 ebv-miR-BART9 -45.2 NC_007605.1 - 88293 0.67 0.999742
Target:  5'- -gAUGGGGCCCAUGAugggcgaGGcGUUGu -3'
miRNA:   3'- gaUGCCCUGGGUACU-------UCaCAAU- -5'
MIMAT0003419 ebv-miR-BART9 -45.2 NC_007605.1 - 144324 0.69 0.998644
Target:  5'- -gGCGGGGCUCAUGGauuagcaggggcuuAGUGUg- -3'
miRNA:   3'- gaUGCCCUGGGUACU--------------UCACAau -5'
MIMAT0003419 ebv-miR-BART9 -45.2 NC_007605.1 - 147043 1.02 0.062184
Target:  5'- aCUACGGGACCCAUGAAGUGUUAc -3'
miRNA:   3'- -GAUGCCCUGGGUACUUCACAAU- -5'
MIMAT0003419 ebv-miR-BART9 -45.2 NC_007605.1 - 151035 0.69 0.998968
Target:  5'- -aGCGGG-CCCAUGAAGg---- -3'
miRNA:   3'- gaUGCCCuGGGUACUUCacaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.