Results 1 - 20 of 36 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | + | 43825 | 0.68 | 0.999786 |
Target: 5'- cACGGCCAGCUCguagGUGGggccUAUGUu -3' miRNA: 3'- -UGUCGGUUGAGg---UACCa---AUACA- -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | + | 83982 | 0.73 | 0.985215 |
Target: 5'- aGCAGCCAAg-CCAUGGUUAa-- -3' miRNA: 3'- -UGUCGGUUgaGGUACCAAUaca -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | + | 102204 | 0.7 | 0.996857 |
Target: 5'- cACAGCC-GCUCCGUGcucuccuaugagcGUUAUGUg -3' miRNA: 3'- -UGUCGGuUGAGGUAC-------------CAAUACA- -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | + | 118407 | 0.66 | 0.999987 |
Target: 5'- cCAGUgAAUgucaCCGUGGUUGUGUu -3' miRNA: 3'- uGUCGgUUGa---GGUACCAAUACA- -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | + | 127720 | 0.68 | 0.999786 |
Target: 5'- --cGCCuuCUCCAUGGUUGaGUc -3' miRNA: 3'- uguCGGuuGAGGUACCAAUaCA- -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | + | 140805 | 0.68 | 0.999786 |
Target: 5'- uGCAGCCGGgUCCggGGUUccGg -3' miRNA: 3'- -UGUCGGUUgAGGuaCCAAuaCa -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | + | 140907 | 0.68 | 0.999786 |
Target: 5'- uGCAGCCGGgUCCggGGUUccGg -3' miRNA: 3'- -UGUCGGUUgAGGuaCCAAuaCa -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | + | 141009 | 0.68 | 0.999786 |
Target: 5'- uGCAGCCGGgUCCggGGUUccGg -3' miRNA: 3'- -UGUCGGUUgAGGuaCCAAuaCa -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | + | 141111 | 0.68 | 0.999786 |
Target: 5'- uGCAGCCGGgUCCggGGUUccGg -3' miRNA: 3'- -UGUCGGUUgAGGuaCCAAuaCa -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | + | 141213 | 0.68 | 0.999786 |
Target: 5'- uGCAGCCGGgUCCggGGUUccGg -3' miRNA: 3'- -UGUCGGUUgAGGuaCCAAuaCa -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | + | 141315 | 0.68 | 0.999786 |
Target: 5'- uGCAGCCGGgUCCggGGUUccGg -3' miRNA: 3'- -UGUCGGUUgAGGuaCCAAuaCa -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | + | 141417 | 0.68 | 0.999786 |
Target: 5'- uGCAGCCGGgUCCggGGUUccGg -3' miRNA: 3'- -UGUCGGUUgAGGuaCCAAuaCa -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | + | 141519 | 0.68 | 0.999786 |
Target: 5'- uGCAGCCGGgUCCggGGUUccGg -3' miRNA: 3'- -UGUCGGUUgAGGuaCCAAuaCa -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | + | 141621 | 0.68 | 0.999786 |
Target: 5'- uGCAGCCGGgUCCggGGUUccGg -3' miRNA: 3'- -UGUCGGUUgAGGuaCCAAuaCa -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | + | 141722 | 0.68 | 0.999786 |
Target: 5'- uGCAGCCGGgUCCggGGUUccGg -3' miRNA: 3'- -UGUCGGUUgAGGuaCCAAuaCa -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | + | 141824 | 0.68 | 0.999786 |
Target: 5'- uGCAGCCGGgUCCggGGUUccGg -3' miRNA: 3'- -UGUCGGUUgAGGuaCCAAuaCa -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | + | 141926 | 0.68 | 0.999786 |
Target: 5'- uGCAGCCGGgUCCggGGUUccGg -3' miRNA: 3'- -UGUCGGUUgAGGuaCCAAuaCa -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | + | 142028 | 0.68 | 0.999786 |
Target: 5'- uGCAGCCGGgUCCggGGUUccGg -3' miRNA: 3'- -UGUCGGUUgAGGuaCCAAuaCa -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | + | 142130 | 0.68 | 0.999786 |
Target: 5'- uGCAGCCGGgUCCggGGUUccGg -3' miRNA: 3'- -UGUCGGUUgAGGuaCCAAuaCa -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | + | 142232 | 0.68 | 0.999786 |
Target: 5'- uGCAGCCGGgUCCggGGUUccGg -3' miRNA: 3'- -UGUCGGUUgAGGuaCCAAuaCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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