miRNA display CGI


Results 21 - 36 of 36 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003420 ebv-miR-BART10 -44.5 NC_007605.1 + 140907 0.68 0.999786
Target:  5'- uGCAGCCGGgUCCggGGUUccGg -3'
miRNA:   3'- -UGUCGGUUgAGGuaCCAAuaCa -5'
MIMAT0003420 ebv-miR-BART10 -44.5 NC_007605.1 + 141009 0.68 0.999786
Target:  5'- uGCAGCCGGgUCCggGGUUccGg -3'
miRNA:   3'- -UGUCGGUUgAGGuaCCAAuaCa -5'
MIMAT0003420 ebv-miR-BART10 -44.5 NC_007605.1 + 141213 0.68 0.999786
Target:  5'- uGCAGCCGGgUCCggGGUUccGg -3'
miRNA:   3'- -UGUCGGUUgAGGuaCCAAuaCa -5'
MIMAT0003420 ebv-miR-BART10 -44.5 NC_007605.1 + 141315 0.68 0.999786
Target:  5'- uGCAGCCGGgUCCggGGUUccGg -3'
miRNA:   3'- -UGUCGGUUgAGGuaCCAAuaCa -5'
MIMAT0003420 ebv-miR-BART10 -44.5 NC_007605.1 + 141417 0.68 0.999786
Target:  5'- uGCAGCCGGgUCCggGGUUccGg -3'
miRNA:   3'- -UGUCGGUUgAGGuaCCAAuaCa -5'
MIMAT0003420 ebv-miR-BART10 -44.5 NC_007605.1 + 141519 0.68 0.999786
Target:  5'- uGCAGCCGGgUCCggGGUUccGg -3'
miRNA:   3'- -UGUCGGUUgAGGuaCCAAuaCa -5'
MIMAT0003420 ebv-miR-BART10 -44.5 NC_007605.1 + 141621 0.68 0.999786
Target:  5'- uGCAGCCGGgUCCggGGUUccGg -3'
miRNA:   3'- -UGUCGGUUgAGGuaCCAAuaCa -5'
MIMAT0003420 ebv-miR-BART10 -44.5 NC_007605.1 + 141722 0.68 0.999786
Target:  5'- uGCAGCCGGgUCCggGGUUccGg -3'
miRNA:   3'- -UGUCGGUUgAGGuaCCAAuaCa -5'
MIMAT0003420 ebv-miR-BART10 -44.5 NC_007605.1 + 141824 0.68 0.999786
Target:  5'- uGCAGCCGGgUCCggGGUUccGg -3'
miRNA:   3'- -UGUCGGUUgAGGuaCCAAuaCa -5'
MIMAT0003420 ebv-miR-BART10 -44.5 NC_007605.1 - 103206 0.69 0.998584
Target:  5'- uGCAGCUgaGACUCCAUGGa----- -3'
miRNA:   3'- -UGUCGG--UUGAGGUACCaauaca -5'
MIMAT0003420 ebv-miR-BART10 -44.5 NC_007605.1 - 85502 0.69 0.998584
Target:  5'- uAguGCCAGCUgCAUGGgaGUGg -3'
miRNA:   3'- -UguCGGUUGAgGUACCaaUACa -5'
MIMAT0003420 ebv-miR-BART10 -44.5 NC_007605.1 + 102204 0.7 0.996857
Target:  5'- cACAGCC-GCUCCGUGcucuccuaugagcGUUAUGUg -3'
miRNA:   3'- -UGUCGGuUGAGGUAC-------------CAAUACA- -5'
MIMAT0003420 ebv-miR-BART10 -44.5 NC_007605.1 + 83982 0.73 0.985215
Target:  5'- aGCAGCCAAg-CCAUGGUUAa-- -3'
miRNA:   3'- -UGUCGGUUgaGGUACCAAUaca -5'
MIMAT0003420 ebv-miR-BART10 -44.5 NC_007605.1 - 8602 0.75 0.958027
Target:  5'- aGCAGCgGACUCCAcUGGUUGUc- -3'
miRNA:   3'- -UGUCGgUUGAGGU-ACCAAUAca -5'
MIMAT0003420 ebv-miR-BART10 -44.5 NC_007605.1 - 102338 0.77 0.89349
Target:  5'- cACGGUCAGCUUCAUGGUcGUGg -3'
miRNA:   3'- -UGUCGGUUGAGGUACCAaUACa -5'
MIMAT0003420 ebv-miR-BART10 -44.5 NC_007605.1 - 147403 1.02 0.06686
Target:  5'- cACAGCCAACUCCAUGGUUAUGUa -3'
miRNA:   3'- -UGUCGGUUGAGGUACCAAUACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.