miRNA display CGI


Results 1 - 20 of 85 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 4859 0.66 0.999537
Target:  5'- uAugCGCcCCGGGCACCAgGGGc -3'
miRNA:   3'- uUugGUGuGGUUUGUGGUgUCCu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 12758 0.67 0.997526
Target:  5'- --cCCGCGCCuGGCGCCuccuCGGGGc -3'
miRNA:   3'- uuuGGUGUGGuUUGUGGu---GUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 15827 0.67 0.997526
Target:  5'- --cCCGCGCCuGGCGCCuccuCGGGGc -3'
miRNA:   3'- uuuGGUGUGGuUUGUGGu---GUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 18896 0.67 0.997526
Target:  5'- --cCCGCGCCuGGCGCCuccuCGGGGc -3'
miRNA:   3'- uuuGGUGUGGuUUGUGGu---GUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 21964 0.67 0.997526
Target:  5'- --cCCGCGCCuGGCGCCuccuCGGGGc -3'
miRNA:   3'- uuuGGUGUGGuUUGUGGu---GUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 25033 0.67 0.997526
Target:  5'- --cCCGCGCCuGGCGCCuccuCGGGGc -3'
miRNA:   3'- uuuGGUGUGGuUUGUGGu---GUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 28102 0.67 0.997526
Target:  5'- --cCCGCGCCuGGCGCCuccuCGGGGc -3'
miRNA:   3'- uuuGGUGUGGuUUGUGGu---GUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 31171 0.67 0.997526
Target:  5'- --cCCGCGCCuGGCGCCuccuCGGGGc -3'
miRNA:   3'- uuuGGUGUGGuUUGUGGu---GUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 34240 0.67 0.997526
Target:  5'- --cCCGCGCCuGGCGCCuccuCGGGGc -3'
miRNA:   3'- uuuGGUGUGGuUUGUGGu---GUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 40288 0.69 0.987869
Target:  5'- aGGACCGCgGCCGAGcCACCAgGGGc -3'
miRNA:   3'- -UUUGGUG-UGGUUU-GUGGUgUCCu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 44842 0.66 0.998873
Target:  5'- uAAAUCugACCAAACAgCACGcucGGAu -3'
miRNA:   3'- -UUUGGugUGGUUUGUgGUGU---CCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 49052 0.67 0.998615
Target:  5'- cAGCaACGCCAAGCuCCAgAGGAc -3'
miRNA:   3'- uUUGgUGUGGUUUGuGGUgUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 50631 0.67 0.997032
Target:  5'- -uGCUGCGCCGGcggcCACCACGGGc -3'
miRNA:   3'- uuUGGUGUGGUUu---GUGGUGUCCu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 61300 0.66 0.999267
Target:  5'- --cCCAUAgCAGAgACCugAGGAg -3'
miRNA:   3'- uuuGGUGUgGUUUgUGGugUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 68625 0.71 0.968226
Target:  5'- cAGCCACuCCAgcAACACCGCAcuGGAg -3'
miRNA:   3'- uUUGGUGuGGU--UUGUGGUGU--CCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 70020 0.66 0.998873
Target:  5'- uAACCGCACCA---GCUaACAGGAc -3'
miRNA:   3'- uUUGGUGUGGUuugUGG-UGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 81663 0.67 0.997949
Target:  5'- gAAACUucugGCAUUAGACGCgCGCGGGAg -3'
miRNA:   3'- -UUUGG----UGUGGUUUGUG-GUGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 86302 0.73 0.914445
Target:  5'- -cAUCACACCAuAUACCGCAaGGAa -3'
miRNA:   3'- uuUGGUGUGGUuUGUGGUGU-CCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 104524 0.67 0.997526
Target:  5'- gAGACCAUGCuCAGugGCCgucugGCAGGGg -3'
miRNA:   3'- -UUUGGUGUG-GUUugUGG-----UGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 108663 0.72 0.956512
Target:  5'- aGGACCACgggugucACCAGcacCGCCACGGGAa -3'
miRNA:   3'- -UUUGGUG-------UGGUUu--GUGGUGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.