miRNA display CGI


Results 21 - 40 of 85 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 5525 0.66 0.998873
Target:  5'- cGAGCCuuGCACCcAACAagGCAGGAc -3'
miRNA:   3'- -UUUGG--UGUGGuUUGUggUGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 160649 0.66 0.998873
Target:  5'- cAGCCACGuCCAGACuCCGgGGGu -3'
miRNA:   3'- uUUGGUGU-GGUUUGuGGUgUCCu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 131555 0.66 0.998873
Target:  5'- --cCCACACCAGggGCACCuuccaaaaAUAGGGa -3'
miRNA:   3'- uuuGGUGUGGUU--UGUGG--------UGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 70020 0.66 0.998873
Target:  5'- uAACCGCACCA---GCUaACAGGAc -3'
miRNA:   3'- uUUGGUGUGGUuugUGG-UGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 53657 0.67 0.998615
Target:  5'- cAGCUGCAggGAACGCUGCAGGAu -3'
miRNA:   3'- uUUGGUGUggUUUGUGGUGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 166004 0.67 0.998615
Target:  5'- gAAACCGCG----GCGCUACAGGAu -3'
miRNA:   3'- -UUUGGUGUgguuUGUGGUGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 129734 0.67 0.998615
Target:  5'- -cGCCAUGCUGAugGCCACGGu- -3'
miRNA:   3'- uuUGGUGUGGUUugUGGUGUCcu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 49052 0.67 0.998615
Target:  5'- cAGCaACGCCAAGCuCCAgAGGAc -3'
miRNA:   3'- uUUGgUGUGGUUUGuGGUgUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 107738 0.67 0.998587
Target:  5'- -uGCCGCaguagaaGCCAAAguugUGCCGCAGGAa -3'
miRNA:   3'- uuUGGUG-------UGGUUU----GUGGUGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 69477 0.67 0.99831
Target:  5'- --gUUACGCCGAGCACCGgcCAGGc -3'
miRNA:   3'- uuuGGUGUGGUUUGUGGU--GUCCu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 104389 0.67 0.99831
Target:  5'- uGACCugGCCAGGCACCcCAu-- -3'
miRNA:   3'- uUUGGugUGGUUUGUGGuGUccu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 53617 0.67 0.998276
Target:  5'- gGGGCCACACCGAcccGCGCCagcucaagaucguGguGGAg -3'
miRNA:   3'- -UUUGGUGUGGUU---UGUGG-------------UguCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 164213 0.67 0.997949
Target:  5'- uGGCCACACUggGGACcggcuacgcggGCCACAGGu -3'
miRNA:   3'- uUUGGUGUGG--UUUG-----------UGGUGUCCu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 81663 0.67 0.997949
Target:  5'- gAAACUucugGCAUUAGACGCgCGCGGGAg -3'
miRNA:   3'- -UUUGG----UGUGGUUUGUG-GUGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 104524 0.67 0.997526
Target:  5'- gAGACCAUGCuCAGugGCCgucugGCAGGGg -3'
miRNA:   3'- -UUUGGUGUG-GUUugUGG-----UGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 28102 0.67 0.997526
Target:  5'- --cCCGCGCCuGGCGCCuccuCGGGGc -3'
miRNA:   3'- uuuGGUGUGGuUUGUGGu---GUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 21964 0.67 0.997526
Target:  5'- --cCCGCGCCuGGCGCCuccuCGGGGc -3'
miRNA:   3'- uuuGGUGUGGuUUGUGGu---GUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 18896 0.67 0.997526
Target:  5'- --cCCGCGCCuGGCGCCuccuCGGGGc -3'
miRNA:   3'- uuuGGUGUGGuUUGUGGu---GUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 15827 0.67 0.997526
Target:  5'- --cCCGCGCCuGGCGCCuccuCGGGGc -3'
miRNA:   3'- uuuGGUGUGGuUUGUGGu---GUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 25033 0.67 0.997526
Target:  5'- --cCCGCGCCuGGCGCCuccuCGGGGc -3'
miRNA:   3'- uuuGGUGUGGuUUGUGGu---GUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.