miRNA display CGI


Results 1 - 20 of 20 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003424 ebv-miR-BART13 -51.6 NC_007605.1 - 36471 0.66 0.973699
Target:  5'- aCAGuuGUUCCUGGUAGGg---- -3'
miRNA:   3'- aGUCggCAGGGACCGUUCaaugu -5'
MIMAT0003424 ebv-miR-BART13 -51.6 NC_007605.1 - 58909 0.66 0.970723
Target:  5'- cUCGGCaguuguucaGUCCCUGGCcgAGGUccUGCAc -3'
miRNA:   3'- -AGUCGg--------CAGGGACCG--UUCA--AUGU- -5'
MIMAT0003424 ebv-miR-BART13 -51.6 NC_007605.1 + 74326 0.66 0.970723
Target:  5'- gUCAGCCGcUUCUUgGGCAGGUgaagcUGCAg -3'
miRNA:   3'- -AGUCGGC-AGGGA-CCGUUCA-----AUGU- -5'
MIMAT0003424 ebv-miR-BART13 -51.6 NC_007605.1 + 38392 0.67 0.94771
Target:  5'- gCAGCCGgggUUCCUGGCGcuccGGggGCAg -3'
miRNA:   3'- aGUCGGC---AGGGACCGU----UCaaUGU- -5'
MIMAT0003424 ebv-miR-BART13 -51.6 NC_007605.1 + 39641 0.67 0.94771
Target:  5'- gCAGCCGgggUUCCUGGCGcuccGGggGCAg -3'
miRNA:   3'- aGUCGGC---AGGGACCGU----UCaaUGU- -5'
MIMAT0003424 ebv-miR-BART13 -51.6 NC_007605.1 + 39516 0.67 0.94771
Target:  5'- gCAGCCGgggUUCCUGGCGcuccGGggGCAg -3'
miRNA:   3'- aGUCGGC---AGGGACCGU----UCaaUGU- -5'
MIMAT0003424 ebv-miR-BART13 -51.6 NC_007605.1 + 39391 0.67 0.94771
Target:  5'- gCAGCCGgggUUCCUGGCGcuccGGggGCAg -3'
miRNA:   3'- aGUCGGC---AGGGACCGU----UCaaUGU- -5'
MIMAT0003424 ebv-miR-BART13 -51.6 NC_007605.1 + 39266 0.67 0.94771
Target:  5'- gCAGCCGgggUUCCUGGCGcuccGGggGCAg -3'
miRNA:   3'- aGUCGGC---AGGGACCGU----UCaaUGU- -5'
MIMAT0003424 ebv-miR-BART13 -51.6 NC_007605.1 + 39141 0.67 0.94771
Target:  5'- gCAGCCGgggUUCCUGGCGcuccGGggGCAg -3'
miRNA:   3'- aGUCGGC---AGGGACCGU----UCaaUGU- -5'
MIMAT0003424 ebv-miR-BART13 -51.6 NC_007605.1 + 39016 0.67 0.94771
Target:  5'- gCAGCCGgggUUCCUGGCGcuccGGggGCAg -3'
miRNA:   3'- aGUCGGC---AGGGACCGU----UCaaUGU- -5'
MIMAT0003424 ebv-miR-BART13 -51.6 NC_007605.1 + 38892 0.67 0.94771
Target:  5'- gCAGCCGgggUUCCUGGCGcuccGGggGCAg -3'
miRNA:   3'- aGUCGGC---AGGGACCGU----UCaaUGU- -5'
MIMAT0003424 ebv-miR-BART13 -51.6 NC_007605.1 + 38767 0.67 0.94771
Target:  5'- gCAGCCGgggUUCCUGGCGcuccGGggGCAg -3'
miRNA:   3'- aGUCGGC---AGGGACCGU----UCaaUGU- -5'
MIMAT0003424 ebv-miR-BART13 -51.6 NC_007605.1 + 38642 0.67 0.94771
Target:  5'- gCAGCCGgggUUCCUGGCGcuccGGggGCAg -3'
miRNA:   3'- aGUCGGC---AGGGACCGU----UCaaUGU- -5'
MIMAT0003424 ebv-miR-BART13 -51.6 NC_007605.1 + 38517 0.67 0.94771
Target:  5'- gCAGCCGgggUUCCUGGCGcuccGGggGCAg -3'
miRNA:   3'- aGUCGGC---AGGGACCGU----UCaaUGU- -5'
MIMAT0003424 ebv-miR-BART13 -51.6 NC_007605.1 + 38267 0.67 0.94771
Target:  5'- gCAGCCGgggUUCCUGGCGcuccGGggGCAg -3'
miRNA:   3'- aGUCGGC---AGGGACCGU----UCaaUGU- -5'
MIMAT0003424 ebv-miR-BART13 -51.6 NC_007605.1 - 56787 0.68 0.921219
Target:  5'- cCuGCCGUCCCUGGCcacgAAGgacGCGg -3'
miRNA:   3'- aGuCGGCAGGGACCG----UUCaa-UGU- -5'
MIMAT0003424 ebv-miR-BART13 -51.6 NC_007605.1 - 121445 0.68 0.915094
Target:  5'- aCGGCCGUCCCgGGCcuc-UACAg -3'
miRNA:   3'- aGUCGGCAGGGaCCGuucaAUGU- -5'
MIMAT0003424 ebv-miR-BART13 -51.6 NC_007605.1 - 68183 0.7 0.856502
Target:  5'- cUCAGCCuGUCgCUGGCcGGggGCAu -3'
miRNA:   3'- -AGUCGG-CAGgGACCGuUCaaUGU- -5'
MIMAT0003424 ebv-miR-BART13 -51.6 NC_007605.1 + 92963 0.73 0.667085
Target:  5'- -gGGCUGUUCCUGGCAAGagucUUGCAg -3'
miRNA:   3'- agUCGGCAGGGACCGUUC----AAUGU- -5'
MIMAT0003424 ebv-miR-BART13 -51.6 NC_007605.1 - 148609 1.01 0.014285
Target:  5'- gUCAGCCGUCCCUGGCAAGUUACAg -3'
miRNA:   3'- -AGUCGGCAGGGACCGUUCAAUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.