miRNA display CGI


Results 1 - 15 of 15 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003426 ebv-miR-BART14-3p -42.8 NC_007605.1 + 125997 0.66 0.999999
Target:  5'- cGUCCCUGCUGCcggagguguccgUGgGGCAc--- -3'
miRNA:   3'- -UAGGGAUGAUG------------ACgUCGUaaau -5'
MIMAT0003426 ebv-miR-BART14-3p -42.8 NC_007605.1 - 54822 0.66 0.999999
Target:  5'- gAUCCCUGCUcguggacgaugguGgUGCGGCGg--- -3'
miRNA:   3'- -UAGGGAUGA-------------UgACGUCGUaaau -5'
MIMAT0003426 ebv-miR-BART14-3p -42.8 NC_007605.1 - 148746 0.66 0.999999
Target:  5'- cAUCCCcagaggGCgaauggGCUGCAGCAa--- -3'
miRNA:   3'- -UAGGGa-----UGa-----UGACGUCGUaaau -5'
MIMAT0003426 ebv-miR-BART14-3p -42.8 NC_007605.1 + 6336 0.67 0.999997
Target:  5'- uAUCCCcGCUACgUGCAGUg---- -3'
miRNA:   3'- -UAGGGaUGAUG-ACGUCGuaaau -5'
MIMAT0003426 ebv-miR-BART14-3p -42.8 NC_007605.1 + 72736 0.67 0.999997
Target:  5'- -aCCCUugUACUGCgcuuguucccacaauAGCAUg-- -3'
miRNA:   3'- uaGGGAugAUGACG---------------UCGUAaau -5'
MIMAT0003426 ebv-miR-BART14-3p -42.8 NC_007605.1 + 102489 0.67 0.999997
Target:  5'- --gCCUACUACUGUGGCc---- -3'
miRNA:   3'- uagGGAUGAUGACGUCGuaaau -5'
MIMAT0003426 ebv-miR-BART14-3p -42.8 NC_007605.1 + 94670 0.67 0.999993
Target:  5'- -cCCCUGC--CUGCAGCAc--- -3'
miRNA:   3'- uaGGGAUGauGACGUCGUaaau -5'
MIMAT0003426 ebv-miR-BART14-3p -42.8 NC_007605.1 + 134197 0.67 0.999985
Target:  5'- cGUCCCUGCUcccccagGCaaUGCAGCGg--- -3'
miRNA:   3'- -UAGGGAUGA-------UG--ACGUCGUaaau -5'
MIMAT0003426 ebv-miR-BART14-3p -42.8 NC_007605.1 + 66012 0.68 0.999961
Target:  5'- cUCCCggagGCU-CUGCGGCAg--- -3'
miRNA:   3'- uAGGGa---UGAuGACGUCGUaaau -5'
MIMAT0003426 ebv-miR-BART14-3p -42.8 NC_007605.1 - 402 0.69 0.9999
Target:  5'- uUCCUUugUGCaGCGGCAUa-- -3'
miRNA:   3'- uAGGGAugAUGaCGUCGUAaau -5'
MIMAT0003426 ebv-miR-BART14-3p -42.8 NC_007605.1 - 57785 0.7 0.999766
Target:  5'- uUCCCcgACUGCaGCAGCAg--- -3'
miRNA:   3'- uAGGGa-UGAUGaCGUCGUaaau -5'
MIMAT0003426 ebv-miR-BART14-3p -42.8 NC_007605.1 + 148534 0.7 0.999605
Target:  5'- uGUCCCUGggcgUUGCUGCAGCc---- -3'
miRNA:   3'- -UAGGGAU----GAUGACGUCGuaaau -5'
MIMAT0003426 ebv-miR-BART14-3p -42.8 NC_007605.1 - 160729 0.71 0.999186
Target:  5'- uGUCCCUGgaGCUGguGCAc--- -3'
miRNA:   3'- -UAGGGAUgaUGACguCGUaaau -5'
MIMAT0003426 ebv-miR-BART14-3p -42.8 NC_007605.1 - 99900 0.71 0.998431
Target:  5'- aGUCCCUGaaccuCUGCAGCAUc-- -3'
miRNA:   3'- -UAGGGAUgau--GACGUCGUAaau -5'
MIMAT0003426 ebv-miR-BART14-3p -42.8 NC_007605.1 - 148823 1.02 0.095766
Target:  5'- gAUCCCUACUACUGCAGCAUUUAc -3'
miRNA:   3'- -UAGGGAUGAUGACGUCGUAAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.