miRNA display CGI


Results 1 - 20 of 56 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 + 5238 0.72 0.779479
Target:  5'- cGGCCUCGGGGCUG-UgGGGUc- -3'
miRNA:   3'- -UUGGGGCCCCGACuAgUCCAau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 + 35324 0.69 0.9132
Target:  5'- uAACUCCGGGcCUGAagAGGUUGa -3'
miRNA:   3'- -UUGGGGCCCcGACUagUCCAAU- -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 + 41605 0.66 0.980776
Target:  5'- aGGCCCgGgGGGCUGGUCcgcuGGg-- -3'
miRNA:   3'- -UUGGGgC-CCCGACUAGu---CCaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 + 48578 0.66 0.982957
Target:  5'- --aUCCGGGGCcucgggGGUCAGGg-- -3'
miRNA:   3'- uugGGGCCCCGa-----CUAGUCCaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 + 51827 0.66 0.982748
Target:  5'- -uCCCCGGGGCggcgugGAggggggcUCGGGg-- -3'
miRNA:   3'- uuGGGGCCCCGa-----CU-------AGUCCaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 + 52699 0.66 0.980776
Target:  5'- cAGCUCCGGgcGGgaGGUCAGGg-- -3'
miRNA:   3'- -UUGGGGCC--CCgaCUAGUCCaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 + 52863 0.66 0.980776
Target:  5'- cGCCCgGGGGCUc--CAGGUc- -3'
miRNA:   3'- uUGGGgCCCCGAcuaGUCCAau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 + 56752 0.66 0.982957
Target:  5'- gGACgUCCGGGGCcUGAUCGcGGa-- -3'
miRNA:   3'- -UUG-GGGCCCCG-ACUAGU-CCaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 + 57347 0.66 0.980776
Target:  5'- gGGCCCCGGGuGUcGGUgAGGg-- -3'
miRNA:   3'- -UUGGGGCCC-CGaCUAgUCCaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 + 63645 0.67 0.95934
Target:  5'- gGGCaCCCGGGGgUGAUgaacUAGGUg- -3'
miRNA:   3'- -UUG-GGGCCCCgACUA----GUCCAau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 + 75713 0.66 0.978392
Target:  5'- cACCCCGGGGUgaggacacUGAgacguGGUUAg -3'
miRNA:   3'- uUGGGGCCCCG--------ACUagu--CCAAU- -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 + 97968 0.66 0.982957
Target:  5'- uGACCUCGGGGaaGAUgGGGc-- -3'
miRNA:   3'- -UUGGGGCCCCgaCUAgUCCaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 + 99555 0.76 0.58545
Target:  5'- -cCCCCGGGGCagaGAUCGGGg-- -3'
miRNA:   3'- uuGGGGCCCCGa--CUAGUCCaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 + 102647 0.66 0.982957
Target:  5'- --aCCCGGGGCUGG-CAGu--- -3'
miRNA:   3'- uugGGGCCCCGACUaGUCcaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 + 115795 0.67 0.963121
Target:  5'- aGGCCCUGGaGCUGAaCAGGa-- -3'
miRNA:   3'- -UUGGGGCCcCGACUaGUCCaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 + 126555 0.67 0.95934
Target:  5'- -cCCCCGGGGCccgcGGUCAcGGa-- -3'
miRNA:   3'- uuGGGGCCCCGa---CUAGU-CCaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 + 127954 0.72 0.799176
Target:  5'- cGugCCCGGGGCgGAgggCAGGg-- -3'
miRNA:   3'- -UugGGGCCCCGaCUa--GUCCaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 + 148510 0.69 0.906692
Target:  5'- gGACCCCGGGGCca---GGGUg- -3'
miRNA:   3'- -UUGGGGCCCCGacuagUCCAau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 + 154196 0.66 0.978392
Target:  5'- cACCCCGGGGC--GUCGuGGa-- -3'
miRNA:   3'- uUGGGGCCCCGacUAGU-CCaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 + 167435 0.73 0.759166
Target:  5'- -gUCCCGGGGCggggGGUCGGGc-- -3'
miRNA:   3'- uuGGGGCCCCGa---CUAGUCCaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.