Results 21 - 40 of 56 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | - | 28669 | 0.66 | 0.975797 |
Target: 5'- cGACCCUGGGGuCUG-UCuGGggGa -3' miRNA: 3'- -UUGGGGCCCC-GACuAGuCCaaU- -5' |
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MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | - | 46470 | 0.67 | 0.969934 |
Target: 5'- cGCCaCCGGGGCUcaaaacGUCGGGg-- -3' miRNA: 3'- uUGG-GGCCCCGAc-----UAGUCCaau -5' |
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MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | - | 34069 | 0.67 | 0.96665 |
Target: 5'- cACCCCGGGGagGAggcCGGGUg- -3' miRNA: 3'- uUGGGGCCCCgaCUa--GUCCAau -5' |
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MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | - | 128137 | 0.67 | 0.96665 |
Target: 5'- cGCCCCGGGcacGCUGAgcgCGGaGUUu -3' miRNA: 3'- uUGGGGCCC---CGACUa--GUC-CAAu -5' |
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MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | - | 64450 | 0.67 | 0.963121 |
Target: 5'- uGCUgCGGccGGCUGGUCAGGg-- -3' miRNA: 3'- uUGGgGCC--CCGACUAGUCCaau -5' |
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MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | + | 115795 | 0.67 | 0.963121 |
Target: 5'- aGGCCCUGGaGCUGAaCAGGa-- -3' miRNA: 3'- -UUGGGGCCcCGACUaGUCCaau -5' |
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MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | + | 126555 | 0.67 | 0.95934 |
Target: 5'- -cCCCCGGGGCccgcGGUCAcGGa-- -3' miRNA: 3'- uuGGGGCCCCGa---CUAGU-CCaau -5' |
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MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | + | 63645 | 0.67 | 0.95934 |
Target: 5'- gGGCaCCCGGGGgUGAUgaacUAGGUg- -3' miRNA: 3'- -UUG-GGGCCCCgACUA----GUCCAau -5' |
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MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | - | 110232 | 0.68 | 0.956947 |
Target: 5'- uAUCCCGGGGgucacgaggccaucuUUGAUCAGGa-- -3' miRNA: 3'- uUGGGGCCCC---------------GACUAGUCCaau -5' |
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MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | - | 113537 | 0.68 | 0.955299 |
Target: 5'- cGCUaCUGGGGCUGAUCAGc--- -3' miRNA: 3'- uUGG-GGCCCCGACUAGUCcaau -5' |
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MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | - | 129825 | 0.68 | 0.946423 |
Target: 5'- gAGCCgaCCGGGGC--GUCAGGUa- -3' miRNA: 3'- -UUGG--GGCCCCGacUAGUCCAau -5' |
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MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | - | 157468 | 0.68 | 0.941578 |
Target: 5'- cACCCUGGGGCUGAcgaUCAa---- -3' miRNA: 3'- uUGGGGCCCCGACU---AGUccaau -5' |
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MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | + | 167707 | 0.68 | 0.941079 |
Target: 5'- -uCCCCGGGGCccGAgcgcgcgUCGGGUg- -3' miRNA: 3'- uuGGGGCCCCGa-CU-------AGUCCAau -5' |
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MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | + | 169572 | 0.68 | 0.941079 |
Target: 5'- -uCCCCGGGGCccGAgcgcgcgUCGGGUg- -3' miRNA: 3'- uuGGGGCCCCGa-CU-------AGUCCAau -5' |
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MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | - | 116532 | 0.69 | 0.919431 |
Target: 5'- cGCCCCaccguGGGCaUGAUCAGGg-- -3' miRNA: 3'- uUGGGGc----CCCG-ACUAGUCCaau -5' |
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MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | + | 35324 | 0.69 | 0.9132 |
Target: 5'- uAACUCCGGGcCUGAagAGGUUGa -3' miRNA: 3'- -UUGGGGCCCcGACUagUCCAAU- -5' |
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MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | + | 148510 | 0.69 | 0.906692 |
Target: 5'- gGACCCCGGGGCca---GGGUg- -3' miRNA: 3'- -UUGGGGCCCCGacuagUCCAau -5' |
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MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | - | 94178 | 0.7 | 0.885541 |
Target: 5'- uGACCgCGGGGCUGcagcCGGGUg- -3' miRNA: 3'- -UUGGgGCCCCGACua--GUCCAau -5' |
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MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | - | 148693 | 0.7 | 0.877962 |
Target: 5'- uGGCCCCGGGGUccaccguggUGAccCAGGUg- -3' miRNA: 3'- -UUGGGGCCCCG---------ACUa-GUCCAau -5' |
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MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | - | 152248 | 0.7 | 0.870127 |
Target: 5'- aGACCCCGGGcGCUGc-CGGGg-- -3' miRNA: 3'- -UUGGGGCCC-CGACuaGUCCaau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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