Results 21 - 40 of 56 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | + | 127954 | 0.72 | 0.799176 |
Target: 5'- cGugCCCGGGGCgGAgggCAGGg-- -3' miRNA: 3'- -UugGGGCCCCGaCUa--GUCCaau -5' |
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MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | + | 126555 | 0.67 | 0.95934 |
Target: 5'- -cCCCCGGGGCccgcGGUCAcGGa-- -3' miRNA: 3'- uuGGGGCCCCGa---CUAGU-CCaau -5' |
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MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | - | 116532 | 0.69 | 0.919431 |
Target: 5'- cGCCCCaccguGGGCaUGAUCAGGg-- -3' miRNA: 3'- uUGGGGc----CCCG-ACUAGUCCaau -5' |
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MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | - | 116041 | 0.76 | 0.57451 |
Target: 5'- cACCCCGGGGUggccaugacggUGGUCAGGa-- -3' miRNA: 3'- uUGGGGCCCCG-----------ACUAGUCCaau -5' |
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MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | + | 115795 | 0.67 | 0.963121 |
Target: 5'- aGGCCCUGGaGCUGAaCAGGa-- -3' miRNA: 3'- -UUGGGGCCcCGACUaGUCCaau -5' |
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MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | - | 113537 | 0.68 | 0.955299 |
Target: 5'- cGCUaCUGGGGCUGAUCAGc--- -3' miRNA: 3'- uUGG-GGCCCCGACUAGUCcaau -5' |
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MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | - | 110232 | 0.68 | 0.956947 |
Target: 5'- uAUCCCGGGGgucacgaggccaucuUUGAUCAGGa-- -3' miRNA: 3'- uUGGGGCCCC---------------GACUAGUCCaau -5' |
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MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | + | 102647 | 0.66 | 0.982957 |
Target: 5'- --aCCCGGGGCUGG-CAGu--- -3' miRNA: 3'- uugGGGCCCCGACUaGUCcaau -5' |
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MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | + | 99555 | 0.76 | 0.58545 |
Target: 5'- -cCCCCGGGGCagaGAUCGGGg-- -3' miRNA: 3'- uuGGGGCCCCGa--CUAGUCCaau -5' |
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MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | + | 97968 | 0.66 | 0.982957 |
Target: 5'- uGACCUCGGGGaaGAUgGGGc-- -3' miRNA: 3'- -UUGGGGCCCCgaCUAgUCCaau -5' |
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MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | - | 94178 | 0.7 | 0.885541 |
Target: 5'- uGACCgCGGGGCUGcagcCGGGUg- -3' miRNA: 3'- -UUGGgGCCCCGACua--GUCCAau -5' |
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MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | - | 80472 | 0.66 | 0.975797 |
Target: 5'- cGCCCCGGGGa-GGUaGGGUg- -3' miRNA: 3'- uUGGGGCCCCgaCUAgUCCAau -5' |
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MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | + | 75713 | 0.66 | 0.978392 |
Target: 5'- cACCCCGGGGUgaggacacUGAgacguGGUUAg -3' miRNA: 3'- uUGGGGCCCCG--------ACUagu--CCAAU- -5' |
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MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | - | 64450 | 0.67 | 0.963121 |
Target: 5'- uGCUgCGGccGGCUGGUCAGGg-- -3' miRNA: 3'- uUGGgGCC--CCGACUAGUCCaau -5' |
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MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | + | 63645 | 0.67 | 0.95934 |
Target: 5'- gGGCaCCCGGGGgUGAUgaacUAGGUg- -3' miRNA: 3'- -UUG-GGGCCCCgACUA----GUCCAau -5' |
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MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | + | 57347 | 0.66 | 0.980776 |
Target: 5'- gGGCCCCGGGuGUcGGUgAGGg-- -3' miRNA: 3'- -UUGGGGCCC-CGaCUAgUCCaau -5' |
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MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | - | 57287 | 0.66 | 0.984947 |
Target: 5'- -gUCgCGGGGCUGucguacagCAGGUUGg -3' miRNA: 3'- uuGGgGCCCCGACua------GUCCAAU- -5' |
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MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | + | 56752 | 0.66 | 0.982957 |
Target: 5'- gGACgUCCGGGGCcUGAUCGcGGa-- -3' miRNA: 3'- -UUG-GGGCCCCG-ACUAGU-CCaau -5' |
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MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | + | 52863 | 0.66 | 0.980776 |
Target: 5'- cGCCCgGGGGCUc--CAGGUc- -3' miRNA: 3'- uUGGGgCCCCGAcuaGUCCAau -5' |
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MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | + | 52699 | 0.66 | 0.980776 |
Target: 5'- cAGCUCCGGgcGGgaGGUCAGGg-- -3' miRNA: 3'- -UUGGGGCC--CCgaCUAGUCCaau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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