Results 21 - 27 of 27 are showing below:
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| Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| MIMAT0003429 | rlcv-miR-rL1-3 | -53.8 | NC_006146.1 | + | 45056 | 0.71 | 0.688506 |
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Target: 5'- cGGCucccUAGGGGCGGCuGAGGUGCc -3' miRNA: 3'- -UCGuc--AUCUCUGCCG-CUCCACGc -5' |
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| MIMAT0003429 | rlcv-miR-rL1-3 | -53.8 | NC_006146.1 | - | 93265 | 0.72 | 0.645794 |
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Target: 5'- cGGCGGagggGGGGGCGGgGGGGUGgGa -3' miRNA: 3'- -UCGUCa---UCUCUGCCgCUCCACgC- -5' |
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| MIMAT0003429 | rlcv-miR-rL1-3 | -53.8 | NC_006146.1 | + | 51466 | 0.74 | 0.508463 |
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Target: 5'- gAGguGUGGAGAUgGGCGGGGgcUGCGg -3' miRNA: 3'- -UCguCAUCUCUG-CCGCUCC--ACGC- -5' |
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| MIMAT0003429 | rlcv-miR-rL1-3 | -53.8 | NC_006146.1 | - | 71087 | 0.77 | 0.351088 |
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Target: 5'- gAGCGGgcacgucgGGAGGCGGCGGGGUccGCGg -3' miRNA: 3'- -UCGUCa-------UCUCUGCCGCUCCA--CGC- -5' |
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| MIMAT0003429 | rlcv-miR-rL1-3 | -53.8 | NC_006146.1 | + | 122967 | 0.79 | 0.289949 |
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Target: 5'- cGCAGcgGGAGGCGGgGAGGUGCc -3' miRNA: 3'- uCGUCa-UCUCUGCCgCUCCACGc -5' |
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| MIMAT0003429 | rlcv-miR-rL1-3 | -53.8 | NC_006146.1 | + | 132984 | 0.8 | 0.249804 |
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Target: 5'- gGGCGGUGGAGACcGCG-GGUGCGg -3' miRNA: 3'- -UCGUCAUCUCUGcCGCuCCACGC- -5' |
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| MIMAT0003429 | rlcv-miR-rL1-3 | -53.8 | NC_006146.1 | - | 133216 | 1.02 | 0.008626 |
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Target: 5'- gAGCAGUAGAGACGGCGAGGUGCGa -3' miRNA: 3'- -UCGUCAUCUCUGCCGCUCCACGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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