miRNA display CGI


Results 1 - 4 of 4 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003431 rlcv-miR-rL1-4-3p -47.6 NC_006146.1 - 144545 0.66 0.999073
Target:  5'- -aGCCUGGUGGG-CGUaGUGGg- -3'
miRNA:   3'- ucUGGAUCACCUaGCA-CACCac -5'
MIMAT0003431 rlcv-miR-rL1-4-3p -47.6 NC_006146.1 - 52327 0.67 0.997016
Target:  5'- cGACCUGGUGGGgccCGaGcUGGUGu -3'
miRNA:   3'- uCUGGAUCACCUa--GCaC-ACCAC- -5'
MIMAT0003431 rlcv-miR-rL1-4-3p -47.6 NC_006146.1 + 60140 0.71 0.953203
Target:  5'- gGGACCUGGUGGGggGUGU-GUGc -3'
miRNA:   3'- -UCUGGAUCACCUagCACAcCAC- -5'
MIMAT0003431 rlcv-miR-rL1-4-3p -47.6 NC_006146.1 - 133386 1.02 0.036983
Target:  5'- gAGACCUAGUGGAUCGUGUGGUGu -3'
miRNA:   3'- -UCUGGAUCACCUAGCACACCAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.