miRNA display CGI


Results 21 - 23 of 23 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003432 rlcv-miR-rL1-5-5p -48.3 NC_006146.1 + 156767 0.72 0.89525
Target:  5'- cAGCGCGUaCACCuGGCugUAGGc- -3'
miRNA:   3'- -UCGUGUA-GUGG-CCGugAUCCaa -5'
MIMAT0003432 rlcv-miR-rL1-5-5p -48.3 NC_006146.1 + 41699 0.75 0.790129
Target:  5'- cAGCGC-UCACCGGCGggGGGUg -3'
miRNA:   3'- -UCGUGuAGUGGCCGUgaUCCAa -5'
MIMAT0003432 rlcv-miR-rL1-5-5p -48.3 NC_006146.1 - 133619 1 0.034172
Target:  5'- cAGCACAUCACCGGCACUAGGUUc -3'
miRNA:   3'- -UCGUGUAGUGGCCGUGAUCCAA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.