miRNA display CGI


Results 1 - 8 of 8 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003434 rlcv-miR-rL1-6-5p -45.8 NC_006146.1 - 56680 0.66 0.99979
Target:  5'- gACuGCGCG-CGCUgaugCCGCUGGAg -3'
miRNA:   3'- gUGuCGUGCaGUGAa---GGUGAUUU- -5'
MIMAT0003434 rlcv-miR-rL1-6-5p -45.8 NC_006146.1 - 120662 0.66 0.999878
Target:  5'- gCGCAGCgACGUCAUggCCAaUAGAa -3'
miRNA:   3'- -GUGUCG-UGCAGUGaaGGUgAUUU- -5'
MIMAT0003434 rlcv-miR-rL1-6-5p -45.8 NC_006146.1 - 151649 0.66 0.99979
Target:  5'- aCGCGGCGCGcCGCUUCgucCUGGAc -3'
miRNA:   3'- -GUGUCGUGCaGUGAAGgu-GAUUU- -5'
MIMAT0003434 rlcv-miR-rL1-6-5p -45.8 NC_006146.1 + 91507 0.67 0.999727
Target:  5'- -uCAGCugGUCAUUagCCGCUGu- -3'
miRNA:   3'- guGUCGugCAGUGAa-GGUGAUuu -5'
MIMAT0003434 rlcv-miR-rL1-6-5p -45.8 NC_006146.1 + 104850 0.67 0.999649
Target:  5'- uCACAGCGCGUCAgCUccUCCGg---- -3'
miRNA:   3'- -GUGUCGUGCAGU-GA--AGGUgauuu -5'
MIMAT0003434 rlcv-miR-rL1-6-5p -45.8 NC_006146.1 + 151465 0.69 0.99706
Target:  5'- aGCGGCGCGcCGCgUCCACg--- -3'
miRNA:   3'- gUGUCGUGCaGUGaAGGUGauuu -5'
MIMAT0003434 rlcv-miR-rL1-6-5p -45.8 NC_006146.1 - 30664 0.69 0.997555
Target:  5'- uUACAGCAUGUCACacgCCagcACUGAGu -3'
miRNA:   3'- -GUGUCGUGCAGUGaa-GG---UGAUUU- -5'
MIMAT0003434 rlcv-miR-rL1-6-5p -45.8 NC_006146.1 - 133756 1.01 0.056751
Target:  5'- uCACAGCACGUCACUUCCACUAAAa -3'
miRNA:   3'- -GUGUCGUGCAGUGAAGGUGAUUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.