miRNA display CGI


Results 1 - 13 of 13 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003435 rlcv-miR-rL1-6-3p -45.9 NC_006146.1 - 133790 1.01 0.049555
Target:  5'- aGACAUAGUGGAUAGCGGUGCUAu -3'
miRNA:   3'- -CUGUAUCACCUAUCGCCACGAU- -5'
MIMAT0003435 rlcv-miR-rL1-6-3p -45.9 NC_006146.1 + 112168 0.72 0.966996
Target:  5'- cGGCAUGuGUGGuggcauUGGUGGUGCUGg -3'
miRNA:   3'- -CUGUAU-CACCu-----AUCGCCACGAU- -5'
MIMAT0003435 rlcv-miR-rL1-6-3p -45.9 NC_006146.1 - 134689 0.7 0.990619
Target:  5'- aGCAUA-UGGAUAGCGGUucggGCUAa -3'
miRNA:   3'- cUGUAUcACCUAUCGCCA----CGAU- -5'
MIMAT0003435 rlcv-miR-rL1-6-3p -45.9 NC_006146.1 + 112096 0.7 0.989008
Target:  5'- uGACAUugcuuggcucgggGGUGGA-GGUGGUGCUGg -3'
miRNA:   3'- -CUGUA-------------UCACCUaUCGCCACGAU- -5'
MIMAT0003435 rlcv-miR-rL1-6-3p -45.9 NC_006146.1 + 123860 0.69 0.994977
Target:  5'- uGGCAUAGUGGAcaaacGUGGUGaCUAu -3'
miRNA:   3'- -CUGUAUCACCUau---CGCCAC-GAU- -5'
MIMAT0003435 rlcv-miR-rL1-6-3p -45.9 NC_006146.1 - 102738 0.69 0.994084
Target:  5'- gGACGccucuGUGGAgauccccgUGGCGGUGCUGg -3'
miRNA:   3'- -CUGUau---CACCU--------AUCGCCACGAU- -5'
MIMAT0003435 rlcv-miR-rL1-6-3p -45.9 NC_006146.1 - 104612 0.68 0.998323
Target:  5'- gGGCAUGG-GGA-GGCuGGUGCUGa -3'
miRNA:   3'- -CUGUAUCaCCUaUCG-CCACGAU- -5'
MIMAT0003435 rlcv-miR-rL1-6-3p -45.9 NC_006146.1 + 37117 0.68 0.997526
Target:  5'- uGCAUGG-GGAUGGUGGguaGCUGc -3'
miRNA:   3'- cUGUAUCaCCUAUCGCCa--CGAU- -5'
MIMAT0003435 rlcv-miR-rL1-6-3p -45.9 NC_006146.1 + 156916 0.67 0.998892
Target:  5'- cGGCcgAGgccUGGGUGGCGGcGCUGa -3'
miRNA:   3'- -CUGuaUC---ACCUAUCGCCaCGAU- -5'
MIMAT0003435 rlcv-miR-rL1-6-3p -45.9 NC_006146.1 - 133385 0.67 0.999434
Target:  5'- aGACcUAGUGGAUcguGUGGUGUUu -3'
miRNA:   3'- -CUGuAUCACCUAu--CGCCACGAu -5'
MIMAT0003435 rlcv-miR-rL1-6-3p -45.9 NC_006146.1 + 38149 0.67 0.999108
Target:  5'- uGACAc-GUGGAUGGgGGUGUUc -3'
miRNA:   3'- -CUGUauCACCUAUCgCCACGAu -5'
MIMAT0003435 rlcv-miR-rL1-6-3p -45.9 NC_006146.1 - 11280 0.67 0.999287
Target:  5'- aACGUGGUGGGUAucGCGGgugggGCa- -3'
miRNA:   3'- cUGUAUCACCUAU--CGCCa----CGau -5'
MIMAT0003435 rlcv-miR-rL1-6-3p -45.9 NC_006146.1 - 73776 0.66 0.999554
Target:  5'- --uGUGGUGG-UGGCGGUGgUGa -3'
miRNA:   3'- cugUAUCACCuAUCGCCACgAU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.