Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| Acc. No. | Name | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| MIMAT0003436 | rlcv-miR-rL1-7 | -43.1 | NC_006146.1 | + | 41402 | 0.69 | 0.999905 |
|
Target: 5'- aGGUGGGCCuGAUGUccGCCUgGg -3' miRNA: 3'- gUCAUUCGG-CUACAaaUGGAgC- -5' |
|||||||
| MIMAT0003436 | rlcv-miR-rL1-7 | -43.1 | NC_006146.1 | + | 112120 | 0.7 | 0.999632 |
|
Target: 5'- aGGUGGuGCUGGUGgugGCCUCGg -3' miRNA: 3'- gUCAUU-CGGCUACaaaUGGAGC- -5' |
|||||||
| MIMAT0003436 | rlcv-miR-rL1-7 | -43.1 | NC_006146.1 | + | 133777 | 0.66 | 0.999999 |
|
Target: 5'- uCAGUGGGCC--UGUUUcCCUCa -3' miRNA: 3'- -GUCAUUCGGcuACAAAuGGAGc -5' |
|||||||
| MIMAT0003436 | rlcv-miR-rL1-7 | -43.1 | NC_006146.1 | + | 153889 | 0.66 | 0.999999 |
|
Target: 5'- gCAGUAGGCCGuucUGUUUucgaGCUUCc -3' miRNA: 3'- -GUCAUUCGGCu--ACAAA----UGGAGc -5' |
|||||||
| MIMAT0003436 | rlcv-miR-rL1-7 | -43.1 | NC_006146.1 | - | 131249 | 0.67 | 0.999995 |
|
Target: 5'- aCAGUGGGCCGGcgggggcUGUgUGCC-CGg -3' miRNA: 3'- -GUCAUUCGGCU-------ACAaAUGGaGC- -5' |
|||||||
| MIMAT0003436 | rlcv-miR-rL1-7 | -43.1 | NC_006146.1 | - | 133932 | 1.02 | 0.095817 |
|
Target: 5'- uCAGUAAGCCGAUGUUUACCUCGa -3' miRNA: 3'- -GUCAUUCGGCUACAAAUGGAGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home