miRNA display CGI


Results 1 - 15 of 15 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003437 rlcv-miR-rL1-8 -45.9 NC_006146.1 + 71294 0.66 0.999861
Target:  5'- -cGUGGGCAGUUGUGUgcuuCCUc- -3'
miRNA:   3'- guUACCCGUCGAUAUAagu-GGAau -5'
MIMAT0003437 rlcv-miR-rL1-8 -45.9 NC_006146.1 - 66406 0.66 0.999691
Target:  5'- ---gGGGCAGCUGggccuggaucUcgUCGCCUg- -3'
miRNA:   3'- guuaCCCGUCGAU----------AuaAGUGGAau -5'
MIMAT0003437 rlcv-miR-rL1-8 -45.9 NC_006146.1 + 162347 0.67 0.999604
Target:  5'- ---cGGGCugcAGCUAUGagCGCCUUGg -3'
miRNA:   3'- guuaCCCG---UCGAUAUaaGUGGAAU- -5'
MIMAT0003437 rlcv-miR-rL1-8 -45.9 NC_006146.1 - 127466 0.67 0.999496
Target:  5'- gAGUGGGCGGCggggcGUGgcCGCCUg- -3'
miRNA:   3'- gUUACCCGUCGa----UAUaaGUGGAau -5'
MIMAT0003437 rlcv-miR-rL1-8 -45.9 NC_006146.1 + 133927 0.67 0.999364
Target:  5'- cCGGUGGGCcGCa--GUUCACCUa- -3'
miRNA:   3'- -GUUACCCGuCGauaUAAGUGGAau -5'
MIMAT0003437 rlcv-miR-rL1-8 -45.9 NC_006146.1 - 121289 0.67 0.999364
Target:  5'- aGAUGGGUGGCUGUcgUCGaucgcCCUg- -3'
miRNA:   3'- gUUACCCGUCGAUAuaAGU-----GGAau -5'
MIMAT0003437 rlcv-miR-rL1-8 -45.9 NC_006146.1 - 104518 0.68 0.998489
Target:  5'- ----cGGCAGCUGUAU-CGCCUUu -3'
miRNA:   3'- guuacCCGUCGAUAUAaGUGGAAu -5'
MIMAT0003437 rlcv-miR-rL1-8 -45.9 NC_006146.1 - 15312 0.68 0.99776
Target:  5'- aGAUGGGUGGCUGUGUguagugugUGCCUg- -3'
miRNA:   3'- gUUACCCGUCGAUAUAa-------GUGGAau -5'
MIMAT0003437 rlcv-miR-rL1-8 -45.9 NC_006146.1 - 18390 0.68 0.99776
Target:  5'- aGAUGGGUGGCUGUGUguagugugUGCCUg- -3'
miRNA:   3'- gUUACCCGUCGAUAUAa-------GUGGAau -5'
MIMAT0003437 rlcv-miR-rL1-8 -45.9 NC_006146.1 - 21467 0.68 0.99776
Target:  5'- aGAUGGGUGGCUGUGUguagugugUGCCUg- -3'
miRNA:   3'- gUUACCCGUCGAUAUAa-------GUGGAau -5'
MIMAT0003437 rlcv-miR-rL1-8 -45.9 NC_006146.1 - 24545 0.68 0.99776
Target:  5'- aGAUGGGUGGCUGUGUguagugugUGCCUg- -3'
miRNA:   3'- gUUACCCGUCGAUAUAa-------GUGGAau -5'
MIMAT0003437 rlcv-miR-rL1-8 -45.9 NC_006146.1 - 27623 0.68 0.99776
Target:  5'- aGAUGGGUGGCUGUGUguagugugUGCCUg- -3'
miRNA:   3'- gUUACCCGUCGAUAUAa-------GUGGAau -5'
MIMAT0003437 rlcv-miR-rL1-8 -45.9 NC_006146.1 + 55839 0.69 0.996758
Target:  5'- gGGUGGGCGGa-AUGUUCGCCc-- -3'
miRNA:   3'- gUUACCCGUCgaUAUAAGUGGaau -5'
MIMAT0003437 rlcv-miR-rL1-8 -45.9 NC_006146.1 - 96171 0.7 0.991359
Target:  5'- gGAUGGaGCGGCUGUGUagCACCc-- -3'
miRNA:   3'- gUUACC-CGUCGAUAUAa-GUGGaau -5'
MIMAT0003437 rlcv-miR-rL1-8 -45.9 NC_006146.1 - 134083 1.01 0.056231
Target:  5'- uCAAUGGGCAGCUAUAUUCACCUUAc -3'
miRNA:   3'- -GUUACCCGUCGAUAUAAGUGGAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.