miRNA display CGI


Results 1 - 20 of 27 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003438 rlcv-miR-rL1-9 -52.1 NC_006146.1 - 94707 0.66 0.967308
Target:  5'- cGCcGGGGGaGGGACCGgggGCGcCGAc -3'
miRNA:   3'- -UGaUUCCC-CCCUGGUa--CGUaGCU- -5'
MIMAT0003438 rlcv-miR-rL1-9 -52.1 NC_006146.1 - 29381 0.66 0.960199
Target:  5'- aGCUGAGGGGGG-CCGgggagggagGCGggGAg -3'
miRNA:   3'- -UGAUUCCCCCCuGGUa--------CGUagCU- -5'
MIMAT0003438 rlcv-miR-rL1-9 -52.1 NC_006146.1 - 26303 0.66 0.960199
Target:  5'- aGCUGAGGGGGG-CCGgggagggagGCGggGAg -3'
miRNA:   3'- -UGAUUCCCCCCuGGUa--------CGUagCU- -5'
MIMAT0003438 rlcv-miR-rL1-9 -52.1 NC_006146.1 - 23225 0.66 0.960199
Target:  5'- aGCUGAGGGGGG-CCGgggagggagGCGggGAg -3'
miRNA:   3'- -UGAUUCCCCCCuGGUa--------CGUagCU- -5'
MIMAT0003438 rlcv-miR-rL1-9 -52.1 NC_006146.1 - 20147 0.66 0.960199
Target:  5'- aGCUGAGGGGGG-CCGgggagggagGCGggGAg -3'
miRNA:   3'- -UGAUUCCCCCCuGGUa--------CGUagCU- -5'
MIMAT0003438 rlcv-miR-rL1-9 -52.1 NC_006146.1 - 17069 0.66 0.960199
Target:  5'- aGCUGAGGGGGG-CCGgggagggagGCGggGAg -3'
miRNA:   3'- -UGAUUCCCCCCuGGUa--------CGUagCU- -5'
MIMAT0003438 rlcv-miR-rL1-9 -52.1 NC_006146.1 - 13991 0.66 0.960199
Target:  5'- aGCUGAGGGGGG-CCGgggagggagGCGggGAg -3'
miRNA:   3'- -UGAUUCCCCCCuGGUa--------CGUagCU- -5'
MIMAT0003438 rlcv-miR-rL1-9 -52.1 NC_006146.1 + 57337 0.67 0.927207
Target:  5'- uCUGGGGGcGGGGCCccggGUGUCGGu -3'
miRNA:   3'- uGAUUCCC-CCCUGGua--CGUAGCU- -5'
MIMAT0003438 rlcv-miR-rL1-9 -52.1 NC_006146.1 - 78867 0.67 0.927207
Target:  5'- uGCUGGGGGGcGGGCCcgGCcugUGGc -3'
miRNA:   3'- -UGAUUCCCC-CCUGGuaCGua-GCU- -5'
MIMAT0003438 rlcv-miR-rL1-9 -52.1 NC_006146.1 + 170113 0.68 0.909041
Target:  5'- ---cAGGGGGGGCCGgcgggGCGUCc- -3'
miRNA:   3'- ugauUCCCCCCUGGUa----CGUAGcu -5'
MIMAT0003438 rlcv-miR-rL1-9 -52.1 NC_006146.1 + 134168 0.68 0.902448
Target:  5'- cCUAAGaGGGGGGCC-UGCAcgcCGAg -3'
miRNA:   3'- uGAUUC-CCCCCUGGuACGUa--GCU- -5'
MIMAT0003438 rlcv-miR-rL1-9 -52.1 NC_006146.1 - 74840 0.68 0.902448
Target:  5'- aAUUGAGGGGGG--CGUGCAUCu- -3'
miRNA:   3'- -UGAUUCCCCCCugGUACGUAGcu -5'
MIMAT0003438 rlcv-miR-rL1-9 -52.1 NC_006146.1 - 79076 0.68 0.895591
Target:  5'- uGCUGGGGGGcGGGCCcgGCcUgGGg -3'
miRNA:   3'- -UGAUUCCCC-CCUGGuaCGuAgCU- -5'
MIMAT0003438 rlcv-miR-rL1-9 -52.1 NC_006146.1 - 79046 0.68 0.895591
Target:  5'- uGCUGGGGGGcGGGCCcgGCcUgGGg -3'
miRNA:   3'- -UGAUUCCCC-CCUGGuaCGuAgCU- -5'
MIMAT0003438 rlcv-miR-rL1-9 -52.1 NC_006146.1 - 78777 0.68 0.895591
Target:  5'- uGCUGGGGGGcGGGCCcgGCcUgGGg -3'
miRNA:   3'- -UGAUUCCCC-CCUGGuaCGuAgCU- -5'
MIMAT0003438 rlcv-miR-rL1-9 -52.1 NC_006146.1 - 78807 0.68 0.895591
Target:  5'- uGCUGGGGGGcGGGCCcgGCcUgGGg -3'
miRNA:   3'- -UGAUUCCCC-CCUGGuaCGuAgCU- -5'
MIMAT0003438 rlcv-miR-rL1-9 -52.1 NC_006146.1 - 78837 0.68 0.895591
Target:  5'- uGCUGGGGGGcGGGCCcgGCcUgGGg -3'
miRNA:   3'- -UGAUUCCCC-CCUGGuaCGuAgCU- -5'
MIMAT0003438 rlcv-miR-rL1-9 -52.1 NC_006146.1 + 93901 0.68 0.895591
Target:  5'- uGCggcAGGGGGGGCCA-GCA-CGGa -3'
miRNA:   3'- -UGau-UCCCCCCUGGUaCGUaGCU- -5'
MIMAT0003438 rlcv-miR-rL1-9 -52.1 NC_006146.1 - 78897 0.68 0.895591
Target:  5'- uGCUGGGGGGcGGGCCcgGCcUgGGg -3'
miRNA:   3'- -UGAUUCCCC-CCUGGuaCGuAgCU- -5'
MIMAT0003438 rlcv-miR-rL1-9 -52.1 NC_006146.1 - 78927 0.68 0.895591
Target:  5'- uGCUGGGGGGcGGGCCcgGCcUgGGg -3'
miRNA:   3'- -UGAUUCCCC-CCUGGuaCGuAgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.