Results 21 - 27 of 27 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0003438 | rlcv-miR-rL1-9 | -52.1 | NC_006146.1 | + | 134168 | 0.68 | 0.902448 |
Target: 5'- cCUAAGaGGGGGGCC-UGCAcgcCGAg -3' miRNA: 3'- uGAUUC-CCCCCUGGuACGUa--GCU- -5' |
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MIMAT0003438 | rlcv-miR-rL1-9 | -52.1 | NC_006146.1 | - | 79076 | 0.68 | 0.895591 |
Target: 5'- uGCUGGGGGGcGGGCCcgGCcUgGGg -3' miRNA: 3'- -UGAUUCCCC-CCUGGuaCGuAgCU- -5' |
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MIMAT0003438 | rlcv-miR-rL1-9 | -52.1 | NC_006146.1 | + | 167314 | 0.7 | 0.822837 |
Target: 5'- cCUGcAGGGGGGGCCGgcgggGCGUCc- -3' miRNA: 3'- uGAU-UCCCCCCUGGUa----CGUAGcu -5' |
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MIMAT0003438 | rlcv-miR-rL1-9 | -52.1 | NC_006146.1 | + | 168246 | 0.7 | 0.822837 |
Target: 5'- cCUGcAGGGGGGGCCGgcgggGCGUCc- -3' miRNA: 3'- uGAU-UCCCCCCUGGUa----CGUAGcu -5' |
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MIMAT0003438 | rlcv-miR-rL1-9 | -52.1 | NC_006146.1 | + | 169178 | 0.7 | 0.822837 |
Target: 5'- cCUGcAGGGGGGGCCGgcgggGCGUCc- -3' miRNA: 3'- uGAU-UCCCCCCUGGUa----CGUAGcu -5' |
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MIMAT0003438 | rlcv-miR-rL1-9 | -52.1 | NC_006146.1 | + | 51587 | 0.73 | 0.691966 |
Target: 5'- gGCcgAAGGGGGGACUGaggccgguUGCGUCGGg -3' miRNA: 3'- -UGa-UUCCCCCCUGGU--------ACGUAGCU- -5' |
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MIMAT0003438 | rlcv-miR-rL1-9 | -52.1 | NC_006146.1 | - | 134403 | 1.02 | 0.013351 |
Target: 5'- cACUAAGGGGGGACCAUGCAUCGAa -3' miRNA: 3'- -UGAUUCCCCCCUGGUACGUAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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