miRNA display CGI


Results 1 - 20 of 20 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003439 rlcv-miR-rL1-10 -49.2 NC_006146.1 - 38045 0.77 0.611385
Target:  5'- cCUAUCuGGUCGCCGGCcacuucugugGCACUGu -3'
miRNA:   3'- -GAUAGuCCAGUGGCCG----------CGUGAU- -5'
MIMAT0003439 rlcv-miR-rL1-10 -49.2 NC_006146.1 - 46109 0.7 0.929528
Target:  5'- cCUAcggCAcGGUCACCGGCcggGCGCUGa -3'
miRNA:   3'- -GAUa--GU-CCAGUGGCCG---CGUGAU- -5'
MIMAT0003439 rlcv-miR-rL1-10 -49.2 NC_006146.1 + 68187 0.67 0.988247
Target:  5'- -cGUCAGGaCGCgGGCGCAg-- -3'
miRNA:   3'- gaUAGUCCaGUGgCCGCGUgau -5'
MIMAT0003439 rlcv-miR-rL1-10 -49.2 NC_006146.1 + 68974 0.66 0.993377
Target:  5'- -gGUCAccgcccccgcGGcCACCGGCGCAUUu -3'
miRNA:   3'- gaUAGU----------CCaGUGGCCGCGUGAu -5'
MIMAT0003439 rlcv-miR-rL1-10 -49.2 NC_006146.1 - 79811 0.72 0.87516
Target:  5'- cCUGUCcccGGGacgagcUCACCGGUGCGCUGu -3'
miRNA:   3'- -GAUAG---UCC------AGUGGCCGCGUGAU- -5'
MIMAT0003439 rlcv-miR-rL1-10 -49.2 NC_006146.1 - 109803 0.69 0.962387
Target:  5'- cCUGUCGcGuGUUugCGGCGCGCg- -3'
miRNA:   3'- -GAUAGU-C-CAGugGCCGCGUGau -5'
MIMAT0003439 rlcv-miR-rL1-10 -49.2 NC_006146.1 + 117926 0.69 0.958512
Target:  5'- ---gCAGGUcCGCCuGCGCACUAc -3'
miRNA:   3'- gauaGUCCA-GUGGcCGCGUGAU- -5'
MIMAT0003439 rlcv-miR-rL1-10 -49.2 NC_006146.1 - 128571 0.69 0.94996
Target:  5'- -gGUCAGGUUGauGGCGUACUGg -3'
miRNA:   3'- gaUAGUCCAGUggCCGCGUGAU- -5'
MIMAT0003439 rlcv-miR-rL1-10 -49.2 NC_006146.1 - 129402 0.71 0.917612
Target:  5'- -aAUCGGGU-GCUGGCGCGCa- -3'
miRNA:   3'- gaUAGUCCAgUGGCCGCGUGau -5'
MIMAT0003439 rlcv-miR-rL1-10 -49.2 NC_006146.1 - 141199 1.01 0.026758
Target:  5'- gCUAUCAGGUCACCGGCGCACUAc -3'
miRNA:   3'- -GAUAGUCCAGUGGCCGCGUGAU- -5'
MIMAT0003439 rlcv-miR-rL1-10 -49.2 NC_006146.1 - 143305 0.69 0.94996
Target:  5'- --cUCAGGUCACCGGCuccaggaaACUAa -3'
miRNA:   3'- gauAGUCCAGUGGCCGcg------UGAU- -5'
MIMAT0003439 rlcv-miR-rL1-10 -49.2 NC_006146.1 + 164296 0.66 0.995162
Target:  5'- uUAUgAGGUcCGCCGGgGcCACUGc -3'
miRNA:   3'- gAUAgUCCA-GUGGCCgC-GUGAU- -5'
MIMAT0003439 rlcv-miR-rL1-10 -49.2 NC_006146.1 + 167180 0.71 0.890402
Target:  5'- ---aCGGGagGCCGGCGCGCg- -3'
miRNA:   3'- gauaGUCCagUGGCCGCGUGau -5'
MIMAT0003439 rlcv-miR-rL1-10 -49.2 NC_006146.1 + 167906 0.7 0.940307
Target:  5'- cCUcgCGGGggCACCGGCGCGu-- -3'
miRNA:   3'- -GAuaGUCCa-GUGGCCGCGUgau -5'
MIMAT0003439 rlcv-miR-rL1-10 -49.2 NC_006146.1 + 168112 0.71 0.890402
Target:  5'- ---aCGGGagGCCGGCGCGCg- -3'
miRNA:   3'- gauaGUCCagUGGCCGCGUGau -5'
MIMAT0003439 rlcv-miR-rL1-10 -49.2 NC_006146.1 + 168838 0.7 0.940307
Target:  5'- cCUcgCGGGggCACCGGCGCGu-- -3'
miRNA:   3'- -GAuaGUCCa-GUGGCCGCGUgau -5'
MIMAT0003439 rlcv-miR-rL1-10 -49.2 NC_006146.1 + 169044 0.71 0.890402
Target:  5'- ---aCGGGagGCCGGCGCGCg- -3'
miRNA:   3'- gauaGUCCagUGGCCGCGUGau -5'
MIMAT0003439 rlcv-miR-rL1-10 -49.2 NC_006146.1 + 169770 0.7 0.940307
Target:  5'- cCUcgCGGGggCACCGGCGCGu-- -3'
miRNA:   3'- -GAuaGUCCa-GUGGCCGCGUgau -5'
MIMAT0003439 rlcv-miR-rL1-10 -49.2 NC_006146.1 + 169976 0.71 0.890402
Target:  5'- ---aCGGGagGCCGGCGCGCg- -3'
miRNA:   3'- gauaGUCCagUGGCCGCGUGau -5'
MIMAT0003439 rlcv-miR-rL1-10 -49.2 NC_006146.1 + 170702 0.67 0.986577
Target:  5'- gUcgCGGGggCACCGGCGCGu-- -3'
miRNA:   3'- gAuaGUCCa-GUGGCCGCGUgau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.