miRNA display CGI

Results 1 - 4 of 4 are showing below:
Show page: 1

<< Previous Page | Next Page >>

Acc. No.	Name	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
MIMAT0003441	rlcv-miR-rL1-12-5p	-50.2	NC_006146.1	-	106247	0.67	0.972274
	Target:  5'- gCCGCcucagGUGCAgaagGGUCgGGUCUg -3' miRNA:   3'- gGGUGa----CACGUa---CCAGaCCAGA- -5'
MIMAT0003441	rlcv-miR-rL1-12-5p	-50.2	NC_006146.1	+	73080	0.7	0.90452
	Target:  5'- aCCACUG-GCAUGGagUGGUUg -3' miRNA:   3'- gGGUGACaCGUACCagACCAGa -5'
MIMAT0003441	rlcv-miR-rL1-12-5p	-50.2	NC_006146.1	-	107456	0.78	0.504169
	Target:  5'- uCCCGCUGUGCcugaaggugAUGGUgCUGGUCUc -3' miRNA:   3'- -GGGUGACACG---------UACCA-GACCAGA- -5'
MIMAT0003441	rlcv-miR-rL1-12-5p	-50.2	NC_006146.1	-	141608	1.01	0.019658
	Target:  5'- gCCCACUGUGCAUGGUCUGGUCUg -3' miRNA:   3'- -GGGUGACACGUACCAGACCAGA- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home