miRNA display CGI


Results 1 - 19 of 19 are showing below:
Show page:



<< Previous Page | Next Page >>
Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003442 rlcv-miR-rL1-12-3p -48.5 NC_006146.1 + 5109 0.77 0.637989
Target:  5'- cCUAGCCGG-CCGUGCcACCGUg -3'
miRNA:   3'- aGAUCGGUCaGGUACG-UGGCAa -5'
MIMAT0003442 rlcv-miR-rL1-12-3p -48.5 NC_006146.1 + 38242 0.69 0.971978
Target:  5'- aCUGGaCCcGUCUcgGCGCCGUg -3'
miRNA:   3'- aGAUC-GGuCAGGuaCGUGGCAa -5'
MIMAT0003442 rlcv-miR-rL1-12-3p -48.5 NC_006146.1 + 47337 0.69 0.965334
Target:  5'- cUCcAGCCGGgCCAgGCGCCGUUu -3'
miRNA:   3'- -AGaUCGGUCaGGUaCGUGGCAA- -5'
MIMAT0003442 rlcv-miR-rL1-12-3p -48.5 NC_006146.1 + 54072 0.68 0.984508
Target:  5'- cCUGGCCGccgcGUCCcgGCACaCGUc -3'
miRNA:   3'- aGAUCGGU----CAGGuaCGUG-GCAa -5'
MIMAT0003442 rlcv-miR-rL1-12-3p -48.5 NC_006146.1 + 95193 0.66 0.995141
Target:  5'- cUUGGCCAgGUCCcUGCGCUGc- -3'
miRNA:   3'- aGAUCGGU-CAGGuACGUGGCaa -5'
MIMAT0003442 rlcv-miR-rL1-12-3p -48.5 NC_006146.1 + 104132 0.67 0.9881
Target:  5'- --cGGCCAGcUUCAUGaCGCCGUa -3'
miRNA:   3'- agaUCGGUC-AGGUAC-GUGGCAa -5'
MIMAT0003442 rlcv-miR-rL1-12-3p -48.5 NC_006146.1 + 120026 0.66 0.995884
Target:  5'- --cGGCCAGUCCggGCACa--- -3'
miRNA:   3'- agaUCGGUCAGGuaCGUGgcaa -5'
MIMAT0003442 rlcv-miR-rL1-12-3p -48.5 NC_006146.1 + 137820 0.68 0.982429
Target:  5'- ---cGCCGGUCCGgUGCACCu-- -3'
miRNA:   3'- agauCGGUCAGGU-ACGUGGcaa -5'
MIMAT0003442 rlcv-miR-rL1-12-3p -48.5 NC_006146.1 + 141731 0.68 0.982211
Target:  5'- -aUAGCCAguGUCCAgggacggUGCACCGg- -3'
miRNA:   3'- agAUCGGU--CAGGU-------ACGUGGCaa -5'
MIMAT0003442 rlcv-miR-rL1-12-3p -48.5 NC_006146.1 + 150581 0.67 0.9881
Target:  5'- gCUGGCCAucGUCCA-GCACCc-- -3'
miRNA:   3'- aGAUCGGU--CAGGUaCGUGGcaa -5'
MIMAT0003442 rlcv-miR-rL1-12-3p -48.5 NC_006146.1 + 158889 0.66 0.996531
Target:  5'- gCU-GCCGGUCUcggGCACCGg- -3'
miRNA:   3'- aGAuCGGUCAGGua-CGUGGCaa -5'
MIMAT0003442 rlcv-miR-rL1-12-3p -48.5 NC_006146.1 + 159333 0.71 0.921979
Target:  5'- gCUGGCCGgcGUCuCGUGCGCCGc- -3'
miRNA:   3'- aGAUCGGU--CAG-GUACGUGGCaa -5'
MIMAT0003442 rlcv-miR-rL1-12-3p -48.5 NC_006146.1 + 160339 0.68 0.984508
Target:  5'- gCUGGCCacGGUCCAUGuCACgGg- -3'
miRNA:   3'- aGAUCGG--UCAGGUAC-GUGgCaa -5'
MIMAT0003442 rlcv-miR-rL1-12-3p -48.5 NC_006146.1 - 65079 0.67 0.989634
Target:  5'- uUCU--UCAGUCCAUGCugGCCGUg -3'
miRNA:   3'- -AGAucGGUCAGGUACG--UGGCAa -5'
MIMAT0003442 rlcv-miR-rL1-12-3p -48.5 NC_006146.1 - 67407 0.66 0.996531
Target:  5'- cCUGGCCGG-CCAgGCgACCGg- -3'
miRNA:   3'- aGAUCGGUCaGGUaCG-UGGCaa -5'
MIMAT0003442 rlcv-miR-rL1-12-3p -48.5 NC_006146.1 - 120012 0.73 0.864069
Target:  5'- cUCUGGCCGGUCCcccgccuUGCGCUGc- -3'
miRNA:   3'- -AGAUCGGUCAGGu------ACGUGGCaa -5'
MIMAT0003442 rlcv-miR-rL1-12-3p -48.5 NC_006146.1 - 123691 0.66 0.995141
Target:  5'- gUCUGGCCg--CCAUGCugaugaccACCGUUa -3'
miRNA:   3'- -AGAUCGGucaGGUACG--------UGGCAA- -5'
MIMAT0003442 rlcv-miR-rL1-12-3p -48.5 NC_006146.1 - 141648 1.01 0.028509
Target:  5'- cUCUAGCCAGUCCAUGCACCGUUa -3'
miRNA:   3'- -AGAUCGGUCAGGUACGUGGCAA- -5'
MIMAT0003442 rlcv-miR-rL1-12-3p -48.5 NC_006146.1 - 150518 0.66 0.995141
Target:  5'- aCUAGCCGG-CC-UGCGCCc-- -3'
miRNA:   3'- aGAUCGGUCaGGuACGUGGcaa -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.