miRNA display CGI


Results 1 - 6 of 6 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003445 rlcv-miR-rL1-14-3p -45.7 NC_006146.1 - 103492 0.66 0.999768
Target:  5'- -gCGUUUGGCCUccgGUGCGAg -3'
miRNA:   3'- caGCAAGUCGGAcuaCACGCU- -5'
MIMAT0003445 rlcv-miR-rL1-14-3p -45.7 NC_006146.1 - 133572 0.66 0.999615
Target:  5'- uGUC-UUUGGUCUGGUGUGUGGg -3'
miRNA:   3'- -CAGcAAGUCGGACUACACGCU- -5'
MIMAT0003445 rlcv-miR-rL1-14-3p -45.7 NC_006146.1 - 96474 0.68 0.997332
Target:  5'- -aCGUgCAGCCUGAUGcgGCGc -3'
miRNA:   3'- caGCAaGUCGGACUACa-CGCu -5'
MIMAT0003445 rlcv-miR-rL1-14-3p -45.7 NC_006146.1 - 148397 0.71 0.984947
Target:  5'- -aUGUUCcugGGCCUGAUGUGCu- -3'
miRNA:   3'- caGCAAG---UCGGACUACACGcu -5'
MIMAT0003445 rlcv-miR-rL1-14-3p -45.7 NC_006146.1 - 142927 1.01 0.052061
Target:  5'- aGUCGUUCAGCCUGAUGUGCGAu -3'
miRNA:   3'- -CAGCAAGUCGGACUACACGCU- -5'
MIMAT0003445 rlcv-miR-rL1-14-3p -45.7 NC_006146.1 - 143119 1.01 0.052061
Target:  5'- aGUCGUUCAGCCUGAUGUGCGAu -3'
miRNA:   3'- -CAGCAAGUCGGACUACACGCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.