miRNA display CGI


Results 1 - 20 of 30 are showing below:
Show page: 


<< Previous Page | Next Page >>
Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003446 rlcv-miR-rL1-15 -49.2 NC_006146.1 - 143365 1.01 0.028053
Target:  5'- aAAACCACACCCAUACUCUACAGGAc -3'
miRNA:   3'- -UUUGGUGUGGGUAUGAGAUGUCCU- -5'
MIMAT0003446 rlcv-miR-rL1-15 -49.2 NC_006146.1 + 54111 0.71 0.922769
Target:  5'- -cACCACGCCCuugaGCgUCUGCAGGu -3'
miRNA:   3'- uuUGGUGUGGGua--UG-AGAUGUCCu -5'
MIMAT0003446 rlcv-miR-rL1-15 -49.2 NC_006146.1 + 130462 0.7 0.953565
Target:  5'- -uGCCGCACCC--GC-CUACGGGGc -3'
miRNA:   3'- uuUGGUGUGGGuaUGaGAUGUCCU- -5'
MIMAT0003446 rlcv-miR-rL1-15 -49.2 NC_006146.1 + 153499 0.69 0.957736
Target:  5'- uGGCCGCugCCGUGCuUCUGgAGGc -3'
miRNA:   3'- uUUGGUGugGGUAUG-AGAUgUCCu -5'
MIMAT0003446 rlcv-miR-rL1-15 -49.2 NC_006146.1 - 147034 0.69 0.961644
Target:  5'- cGAGCCAgGCCCGgGCUCUACGcuGGc -3'
miRNA:   3'- -UUUGGUgUGGGUaUGAGAUGU--CCu -5'
MIMAT0003446 rlcv-miR-rL1-15 -49.2 NC_006146.1 - 112506 0.69 0.961644
Target:  5'- cAGACCAgCGCCaAUACaUCUACGGGGg -3'
miRNA:   3'- -UUUGGU-GUGGgUAUG-AGAUGUCCU- -5'
MIMAT0003446 rlcv-miR-rL1-15 -49.2 NC_006146.1 + 89136 0.68 0.974765
Target:  5'- gAGACCggGCGgCCAUGCUCUcaugcaacgcGCAGGGg -3'
miRNA:   3'- -UUUGG--UGUgGGUAUGAGA----------UGUCCU- -5'
MIMAT0003446 rlcv-miR-rL1-15 -49.2 NC_006146.1 - 95323 0.68 0.979932
Target:  5'- cGGACCAaGCCCAggggGCUCUACucGGGc -3'
miRNA:   3'- -UUUGGUgUGGGUa---UGAGAUGu-CCU- -5'
MIMAT0003446 rlcv-miR-rL1-15 -49.2 NC_006146.1 - 21812 0.68 0.984267
Target:  5'- aGGGCCuguaGCCCGUgACUCUGgAGGAc -3'
miRNA:   3'- -UUUGGug--UGGGUA-UGAGAUgUCCU- -5'
MIMAT0003446 rlcv-miR-rL1-15 -49.2 NC_006146.1 - 24890 0.68 0.984267
Target:  5'- aGGGCCuguaGCCCGUgACUCUGgAGGAc -3'
miRNA:   3'- -UUUGGug--UGGGUA-UGAGAUgUCCU- -5'
MIMAT0003446 rlcv-miR-rL1-15 -49.2 NC_006146.1 - 27968 0.68 0.984267
Target:  5'- aGGGCCuguaGCCCGUgACUCUGgAGGAc -3'
miRNA:   3'- -UUUGGug--UGGGUA-UGAGAUgUCCU- -5'
MIMAT0003446 rlcv-miR-rL1-15 -49.2 NC_006146.1 - 18734 0.68 0.984267
Target:  5'- aGGGCCuguaGCCCGUgACUCUGgAGGAc -3'
miRNA:   3'- -UUUGGug--UGGGUA-UGAGAUgUCCU- -5'
MIMAT0003446 rlcv-miR-rL1-15 -49.2 NC_006146.1 - 15656 0.68 0.984267
Target:  5'- aGGGCCuguaGCCCGUgACUCUGgAGGAc -3'
miRNA:   3'- -UUUGGug--UGGGUA-UGAGAUgUCCU- -5'
MIMAT0003446 rlcv-miR-rL1-15 -49.2 NC_006146.1 - 12577 0.68 0.984267
Target:  5'- aGGGCCuguaGCCCGUgACUCUGgAGGAc -3'
miRNA:   3'- -UUUGGug--UGGGUA-UGAGAUgUCCU- -5'
MIMAT0003446 rlcv-miR-rL1-15 -49.2 NC_006146.1 + 8730 0.67 0.986147
Target:  5'- gGGACCGuggauaGCCUAUGCuaUCUACAGGGu -3'
miRNA:   3'- -UUUGGUg-----UGGGUAUG--AGAUGUCCU- -5'
MIMAT0003446 rlcv-miR-rL1-15 -49.2 NC_006146.1 - 4372 0.67 0.987851
Target:  5'- -cGCCGaGCCCGU-CUCgggGCAGGAg -3'
miRNA:   3'- uuUGGUgUGGGUAuGAGa--UGUCCU- -5'
MIMAT0003446 rlcv-miR-rL1-15 -49.2 NC_006146.1 - 34121 0.67 0.988792
Target:  5'- cGGACCGCACCCAccggaccggaggaGCUCcaggACGGGGg -3'
miRNA:   3'- -UUUGGUGUGGGUa------------UGAGa---UGUCCU- -5'
MIMAT0003446 rlcv-miR-rL1-15 -49.2 NC_006146.1 - 65312 0.67 0.989388
Target:  5'- -cACCaggGCACCCAggGCUCccagACGGGAa -3'
miRNA:   3'- uuUGG---UGUGGGUa-UGAGa---UGUCCU- -5'
MIMAT0003446 rlcv-miR-rL1-15 -49.2 NC_006146.1 - 170778 0.67 0.990768
Target:  5'- -cGCCACGCCCAgcugucAUUCUcccggccaACGGGAg -3'
miRNA:   3'- uuUGGUGUGGGUa-----UGAGA--------UGUCCU- -5'
MIMAT0003446 rlcv-miR-rL1-15 -49.2 NC_006146.1 + 100741 0.67 0.990768
Target:  5'- -cACCACcucaccCCCAUGCUCUAUcuGGAg -3'
miRNA:   3'- uuUGGUGu-----GGGUAUGAGAUGu-CCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.