Results 21 - 30 of 30 are showing below:
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| Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| MIMAT0003446 | rlcv-miR-rL1-15 | -49.2 | NC_006146.1 | - | 18734 | 0.68 | 0.984267 |
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Target: 5'- aGGGCCuguaGCCCGUgACUCUGgAGGAc -3' miRNA: 3'- -UUUGGug--UGGGUA-UGAGAUgUCCU- -5' |
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| MIMAT0003446 | rlcv-miR-rL1-15 | -49.2 | NC_006146.1 | - | 21812 | 0.68 | 0.984267 |
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Target: 5'- aGGGCCuguaGCCCGUgACUCUGgAGGAc -3' miRNA: 3'- -UUUGGug--UGGGUA-UGAGAUgUCCU- -5' |
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| MIMAT0003446 | rlcv-miR-rL1-15 | -49.2 | NC_006146.1 | - | 95323 | 0.68 | 0.979932 |
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Target: 5'- cGGACCAaGCCCAggggGCUCUACucGGGc -3' miRNA: 3'- -UUUGGUgUGGGUa---UGAGAUGu-CCU- -5' |
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| MIMAT0003446 | rlcv-miR-rL1-15 | -49.2 | NC_006146.1 | + | 89136 | 0.68 | 0.974765 |
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Target: 5'- gAGACCggGCGgCCAUGCUCUcaugcaacgcGCAGGGg -3' miRNA: 3'- -UUUGG--UGUgGGUAUGAGA----------UGUCCU- -5' |
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| MIMAT0003446 | rlcv-miR-rL1-15 | -49.2 | NC_006146.1 | - | 147034 | 0.69 | 0.961644 |
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Target: 5'- cGAGCCAgGCCCGgGCUCUACGcuGGc -3' miRNA: 3'- -UUUGGUgUGGGUaUGAGAUGU--CCu -5' |
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| MIMAT0003446 | rlcv-miR-rL1-15 | -49.2 | NC_006146.1 | - | 112506 | 0.69 | 0.961644 |
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Target: 5'- cAGACCAgCGCCaAUACaUCUACGGGGg -3' miRNA: 3'- -UUUGGU-GUGGgUAUG-AGAUGUCCU- -5' |
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| MIMAT0003446 | rlcv-miR-rL1-15 | -49.2 | NC_006146.1 | + | 153499 | 0.69 | 0.957736 |
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Target: 5'- uGGCCGCugCCGUGCuUCUGgAGGc -3' miRNA: 3'- uUUGGUGugGGUAUG-AGAUgUCCu -5' |
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| MIMAT0003446 | rlcv-miR-rL1-15 | -49.2 | NC_006146.1 | + | 130462 | 0.7 | 0.953565 |
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Target: 5'- -uGCCGCACCC--GC-CUACGGGGc -3' miRNA: 3'- uuUGGUGUGGGuaUGaGAUGUCCU- -5' |
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| MIMAT0003446 | rlcv-miR-rL1-15 | -49.2 | NC_006146.1 | + | 54111 | 0.71 | 0.922769 |
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Target: 5'- -cACCACGCCCuugaGCgUCUGCAGGu -3' miRNA: 3'- uuUGGUGUGGGua--UG-AGAUGUCCu -5' |
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| MIMAT0003446 | rlcv-miR-rL1-15 | -49.2 | NC_006146.1 | - | 143365 | 1.01 | 0.028053 |
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Target: 5'- aAAACCACACCCAUACUCUACAGGAc -3' miRNA: 3'- -UUUGGUGUGGGUAUGAGAUGUCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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