miRNA display CGI


Results 1 - 8 of 8 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003448 rlcv-miR-rL1-16-3p -44.3 NC_006146.1 + 154528 0.66 0.999977
Target:  5'- -cAACAGGCCcucuGUGUGUUUCu-- -3'
miRNA:   3'- ccUUGUCCGG----UACACAAAGuac -5'
MIMAT0003448 rlcv-miR-rL1-16-3p -44.3 NC_006146.1 + 167577 0.66 0.999984
Target:  5'- cGGAgAGGCCGUGUGUggaggCcgGg -3'
miRNA:   3'- cCUUgUCCGGUACACAaa---GuaC- -5'
MIMAT0003448 rlcv-miR-rL1-16-3p -44.3 NC_006146.1 + 168509 0.66 0.999984
Target:  5'- cGGAgAGGCCGUGUGUggaggCcgGg -3'
miRNA:   3'- cCUUgUCCGGUACACAaa---GuaC- -5'
MIMAT0003448 rlcv-miR-rL1-16-3p -44.3 NC_006146.1 + 169441 0.66 0.999984
Target:  5'- cGGAgAGGCCGUGUGUggaggCcgGg -3'
miRNA:   3'- cCUUgUCCGGUACACAaa---GuaC- -5'
MIMAT0003448 rlcv-miR-rL1-16-3p -44.3 NC_006146.1 + 170372 0.66 0.999984
Target:  5'- cGGAgAGGCCGUGUGUggaggCcgGg -3'
miRNA:   3'- cCUUgUCCGGUACACAaa---GuaC- -5'
MIMAT0003448 rlcv-miR-rL1-16-3p -44.3 NC_006146.1 - 150207 0.7 0.998023
Target:  5'- uGGAGCGGGCCAaGgccUUCGUGg -3'
miRNA:   3'- -CCUUGUCCGGUaCacaAAGUAC- -5'
MIMAT0003448 rlcv-miR-rL1-16-3p -44.3 NC_006146.1 - 68201 0.71 0.995074
Target:  5'- gGGGACgccagGGGCCGUGUGg--CGUGg -3'
miRNA:   3'- -CCUUG-----UCCGGUACACaaaGUAC- -5'
MIMAT0003448 rlcv-miR-rL1-16-3p -44.3 NC_006146.1 - 143827 1.01 0.077542
Target:  5'- aGGAACAGGCCAUGUGUUUCAUGc -3'
miRNA:   3'- -CCUUGUCCGGUACACAAAGUAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.