miRNA display CGI


Results 1 - 13 of 13 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003712 kshv-miR-K12-12 -51.8 NC_003409.1 + 23974 0.66 0.937462
Target:  5'- gCGGGGGGGGggcuaGUGaGUcacgGGCCUGGa -3'
miRNA:   3'- -GCCUCUCCU-----UAC-CA----CCGGACCa -5'
MIMAT0003712 kshv-miR-K12-12 -51.8 NC_003409.1 - 108814 0.66 0.950561
Target:  5'- uGGAGuGuGGAUGGUgauauggucuccugGGCCUGGc -3'
miRNA:   3'- gCCUCuC-CUUACCA--------------CCGGACCa -5'
MIMAT0003712 kshv-miR-K12-12 -51.8 NC_003409.1 + 108528 0.67 0.907832
Target:  5'- aGGGGGGGAAggccgcGGUGGaauCCUGGc -3'
miRNA:   3'- gCCUCUCCUUa-----CCACC---GGACCa -5'
MIMAT0003712 kshv-miR-K12-12 -51.8 NC_003409.1 - 66649 0.67 0.901071
Target:  5'- gGGuGGGGGAUGGUGGgaggCUGGc -3'
miRNA:   3'- gCCuCUCCUUACCACCg---GACCa -5'
MIMAT0003712 kshv-miR-K12-12 -51.8 NC_003409.1 - 76376 0.67 0.920524
Target:  5'- uCGGucAGuucuGUGGUGGCCUGGa -3'
miRNA:   3'- -GCCucUCcu--UACCACCGGACCa -5'
MIMAT0003712 kshv-miR-K12-12 -51.8 NC_003409.1 - 117736 0.68 0.894036
Target:  5'- uCGGuGGGGGAgGGUGcCCUGGUu -3'
miRNA:   3'- -GCCuCUCCUUaCCACcGGACCA- -5'
MIMAT0003712 kshv-miR-K12-12 -51.8 NC_003409.1 + 48971 0.7 0.790564
Target:  5'- --cGGAGGAAUGGUGGacggcuccguCCUGGUg -3'
miRNA:   3'- gccUCUCCUUACCACC----------GGACCA- -5'
MIMAT0003712 kshv-miR-K12-12 -51.8 NC_003409.1 + 118301 0.7 0.780612
Target:  5'- cCGGGGAGGAGgcuggGGUGcGCCgcgccgGGUu -3'
miRNA:   3'- -GCCUCUCCUUa----CCAC-CGGa-----CCA- -5'
MIMAT0003712 kshv-miR-K12-12 -51.8 NC_003409.1 + 12194 0.71 0.760252
Target:  5'- cCGGAGAGGAcgGaGUGGCCc--- -3'
miRNA:   3'- -GCCUCUCCUuaC-CACCGGacca -5'
MIMAT0003712 kshv-miR-K12-12 -51.8 NC_003409.1 - 22757 0.71 0.746726
Target:  5'- uGGGGAGGAAaagcgcggcaccccUGGUcGCCUGGg -3'
miRNA:   3'- gCCUCUCCUU--------------ACCAcCGGACCa -5'
MIMAT0003712 kshv-miR-K12-12 -51.8 NC_003409.1 - 87917 0.73 0.61907
Target:  5'- gGGAGAucuuccugucacGGGAUGGUGGCCUcaGGg -3'
miRNA:   3'- gCCUCU------------CCUUACCACCGGA--CCa -5'
MIMAT0003712 kshv-miR-K12-12 -51.8 NC_003409.1 - 90959 0.74 0.585917
Target:  5'- uGGGGAGGggUGG-GGCaaaUGGUu -3'
miRNA:   3'- gCCUCUCCuuACCaCCGg--ACCA- -5'
MIMAT0003712 kshv-miR-K12-12 -51.8 NC_003409.1 + 117611 1 0.014084
Target:  5'- gCGGAGAGGAAUGGUGGCCUGGUu -3'
miRNA:   3'- -GCCUCUCCUUACCACCGGACCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.