miRNA display CGI


Results 1 - 20 of 43 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 - 4967 0.66 1
Target:  5'- cCUGUCAacgGGGAGACu--GCCAgUg -3'
miRNA:   3'- -GAUAGU---UCCUUUGuuuUGGUgA- -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 + 14303 0.72 0.999999
Target:  5'- uUGUCAguucuAGGGAGgGGGACCACUg -3'
miRNA:   3'- gAUAGU-----UCCUUUgUUUUGGUGA- -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 + 17372 0.72 0.999999
Target:  5'- uUGUCAguucuAGGGAGgGGGACCACUg -3'
miRNA:   3'- gAUAGU-----UCCUUUgUUUUGGUGA- -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 + 20441 0.72 0.999999
Target:  5'- uUGUCAguucuAGGGAGgGGGACCACUg -3'
miRNA:   3'- gAUAGU-----UCCUUUgUUUUGGUGA- -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 + 23510 0.72 0.999999
Target:  5'- uUGUCAguucuAGGGAGgGGGACCACUg -3'
miRNA:   3'- gAUAGU-----UCCUUUgUUUUGGUGA- -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 + 26579 0.72 0.999999
Target:  5'- uUGUCAguucuAGGGAGgGGGACCACUg -3'
miRNA:   3'- gAUAGU-----UCCUUUgUUUUGGUGA- -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 + 29648 0.72 0.999999
Target:  5'- uUGUCAguucuAGGGAGgGGGACCACUg -3'
miRNA:   3'- gAUAGU-----UCCUUUgUUUUGGUGA- -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 + 32717 0.72 0.999999
Target:  5'- uUGUCAguucuAGGGAGgGGGACCACUg -3'
miRNA:   3'- gAUAGU-----UCCUUUgUUUUGGUGA- -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 + 40244 0.66 1
Target:  5'- -gGUCcAGGggGCA--GCCGCg -3'
miRNA:   3'- gaUAGuUCCuuUGUuuUGGUGa -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 + 44654 0.68 1
Target:  5'- -gGUCAAGGccguggaugcGCAGGACCACg -3'
miRNA:   3'- gaUAGUUCCuu--------UGUUUUGGUGa -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 - 47719 0.66 1
Target:  5'- -cAUC-AGG-AGCAGGGCCACg -3'
miRNA:   3'- gaUAGuUCCuUUGUUUUGGUGa -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 - 55662 0.67 1
Target:  5'- --uUCGAGGAGAgCAuAGACCACc -3'
miRNA:   3'- gauAGUUCCUUU-GU-UUUGGUGa -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 + 57645 0.66 1
Target:  5'- --uUCGAGGGAGCu--GCCugUg -3'
miRNA:   3'- gauAGUUCCUUUGuuuUGGugA- -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 + 62049 0.69 1
Target:  5'- ---cCAGGGGcAGCGAGGCCACc -3'
miRNA:   3'- gauaGUUCCU-UUGUUUUGGUGa -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 - 62950 0.66 1
Target:  5'- gCUGUCu-GGGGACGAccCCGCUg -3'
miRNA:   3'- -GAUAGuuCCUUUGUUuuGGUGA- -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 + 63692 0.69 1
Target:  5'- cCUAU-GAGGAAGCcGGGCCGCg -3'
miRNA:   3'- -GAUAgUUCCUUUGuUUUGGUGa -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 - 64112 0.73 0.999997
Target:  5'- gCUGUCAaucuccaccacgGGGAGGCuAGAGCCACg -3'
miRNA:   3'- -GAUAGU------------UCCUUUG-UUUUGGUGa -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 - 76485 0.72 1
Target:  5'- -aGUCAGGGAAGCcgccGCCGCg -3'
miRNA:   3'- gaUAGUUCCUUUGuuu-UGGUGa -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 + 76941 0.71 1
Target:  5'- cCUggUGAGGGAACAcGACCACg -3'
miRNA:   3'- -GAuaGUUCCUUUGUuUUGGUGa -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 - 93500 0.67 1
Target:  5'- ---gCAuGGAGGCAuAGCCACUg -3'
miRNA:   3'- gauaGUuCCUUUGUuUUGGUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.