miRNA display CGI


Results 1 - 20 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 + 14303 0.72 0.999999
Target:  5'- uUGUCAguucuAGGGAGgGGGACCACUg -3'
miRNA:   3'- gAUAGU-----UCCUUUgUUUUGGUGA- -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 + 17372 0.72 0.999999
Target:  5'- uUGUCAguucuAGGGAGgGGGACCACUg -3'
miRNA:   3'- gAUAGU-----UCCUUUgUUUUGGUGA- -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 + 20441 0.72 0.999999
Target:  5'- uUGUCAguucuAGGGAGgGGGACCACUg -3'
miRNA:   3'- gAUAGU-----UCCUUUgUUUUGGUGA- -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 + 23510 0.72 0.999999
Target:  5'- uUGUCAguucuAGGGAGgGGGACCACUg -3'
miRNA:   3'- gAUAGU-----UCCUUUgUUUUGGUGA- -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 + 26579 0.72 0.999999
Target:  5'- uUGUCAguucuAGGGAGgGGGACCACUg -3'
miRNA:   3'- gAUAGU-----UCCUUUgUUUUGGUGA- -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 + 29648 0.72 0.999999
Target:  5'- uUGUCAguucuAGGGAGgGGGACCACUg -3'
miRNA:   3'- gAUAGU-----UCCUUUgUUUUGGUGA- -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 + 32717 0.72 0.999999
Target:  5'- uUGUCAguucuAGGGAGgGGGACCACUg -3'
miRNA:   3'- gAUAGU-----UCCUUUgUUUUGGUGA- -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 + 40244 0.66 1
Target:  5'- -gGUCcAGGggGCA--GCCGCg -3'
miRNA:   3'- gaUAGuUCCuuUGUuuUGGUGa -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 + 44654 0.68 1
Target:  5'- -gGUCAAGGccguggaugcGCAGGACCACg -3'
miRNA:   3'- gaUAGUUCCuu--------UGUUUUGGUGa -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 + 57645 0.66 1
Target:  5'- --uUCGAGGGAGCu--GCCugUg -3'
miRNA:   3'- gauAGUUCCUUUGuuuUGGugA- -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 + 62049 0.69 1
Target:  5'- ---cCAGGGGcAGCGAGGCCACc -3'
miRNA:   3'- gauaGUUCCU-UUGUUUUGGUGa -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 + 63692 0.69 1
Target:  5'- cCUAU-GAGGAAGCcGGGCCGCg -3'
miRNA:   3'- -GAUAgUUCCUUUGuUUUGGUGa -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 + 76941 0.71 1
Target:  5'- cCUggUGAGGGAACAcGACCACg -3'
miRNA:   3'- -GAuaGUUCCUUUGUuUUGGUGa -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 + 95043 0.74 0.999988
Target:  5'- --cUCAGGGGccaAGCAAAACCGCg -3'
miRNA:   3'- gauAGUUCCU---UUGUUUUGGUGa -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 + 96553 0.69 1
Target:  5'- -gGUCGAGGAGGCAguggAGGCCGg- -3'
miRNA:   3'- gaUAGUUCCUUUGU----UUUGGUga -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 + 96601 0.7 1
Target:  5'- -gGUCGAGGAgguaGugGAGGCCGCc -3'
miRNA:   3'- gaUAGUUCCU----UugUUUUGGUGa -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 + 106432 0.7 1
Target:  5'- -aGUCGAGGgcGCGuuGACCACg -3'
miRNA:   3'- gaUAGUUCCuuUGUu-UUGGUGa -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 + 109727 0.73 0.999997
Target:  5'- aCUAaCGAGGAGACAAAGUCACa -3'
miRNA:   3'- -GAUaGUUCCUUUGUUUUGGUGa -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 + 125681 0.67 1
Target:  5'- gCUGUCAuGGccAAACAAuGCCACa -3'
miRNA:   3'- -GAUAGUuCC--UUUGUUuUGGUGa -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 + 133952 0.72 1
Target:  5'- cCUGUUuguGGGAGCGGGACUACUg -3'
miRNA:   3'- -GAUAGuu-CCUUUGUUUUGGUGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.