Results 1 - 20 of 25 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0003714 | ebv-miR-BART16 | -45.8 | NC_007605.1 | - | 139853 | 1.01 | 0.05673 |
Target: 5'- aCAAGAGCACACACCCACUCUAUc -3' miRNA: 3'- -GUUCUCGUGUGUGGGUGAGAUA- -5' |
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MIMAT0003714 | ebv-miR-BART16 | -45.8 | NC_007605.1 | - | 135969 | 0.74 | 0.934781 |
Target: 5'- gAGGGGCAgGCGCUgACUCUGUg -3' miRNA: 3'- gUUCUCGUgUGUGGgUGAGAUA- -5' |
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MIMAT0003714 | ebv-miR-BART16 | -45.8 | NC_007605.1 | + | 10470 | 0.72 | 0.966551 |
Target: 5'- gGAGGGCACuCGCCCACUa--- -3' miRNA: 3'- gUUCUCGUGuGUGGGUGAgaua -5' |
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MIMAT0003714 | ebv-miR-BART16 | -45.8 | NC_007605.1 | - | 55020 | 0.72 | 0.973135 |
Target: 5'- uGGGGGCACGCccagaGCCCGCUCc-- -3' miRNA: 3'- gUUCUCGUGUG-----UGGGUGAGaua -5' |
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MIMAT0003714 | ebv-miR-BART16 | -45.8 | NC_007605.1 | + | 116394 | 0.72 | 0.978726 |
Target: 5'- gUAAGGGCGCACA-CCACUCc-- -3' miRNA: 3'- -GUUCUCGUGUGUgGGUGAGaua -5' |
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MIMAT0003714 | ebv-miR-BART16 | -45.8 | NC_007605.1 | + | 111275 | 0.7 | 0.990386 |
Target: 5'- -cGGAGCuccuC-CACCCGCUCUAg -3' miRNA: 3'- guUCUCGu---GuGUGGGUGAGAUa -5' |
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MIMAT0003714 | ebv-miR-BART16 | -45.8 | NC_007605.1 | - | 70951 | 0.7 | 0.991704 |
Target: 5'- aAAGAGCugGCACCCuGCUUc-- -3' miRNA: 3'- gUUCUCGugUGUGGG-UGAGaua -5' |
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MIMAT0003714 | ebv-miR-BART16 | -45.8 | NC_007605.1 | - | 150650 | 0.7 | 0.992875 |
Target: 5'- -cAGGGCgGCACGCCCucuCUCUGg -3' miRNA: 3'- guUCUCG-UGUGUGGGu--GAGAUa -5' |
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MIMAT0003714 | ebv-miR-BART16 | -45.8 | NC_007605.1 | - | 119937 | 0.7 | 0.992875 |
Target: 5'- --uGAGCcugaGCACACCCAC-CUAUg -3' miRNA: 3'- guuCUCG----UGUGUGGGUGaGAUA- -5' |
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MIMAT0003714 | ebv-miR-BART16 | -45.8 | NC_007605.1 | + | 7388 | 0.69 | 0.994821 |
Target: 5'- aAGGAuaGCACuCCCACUCUAc -3' miRNA: 3'- gUUCUcgUGUGuGGGUGAGAUa -5' |
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MIMAT0003714 | ebv-miR-BART16 | -45.8 | NC_007605.1 | - | 76876 | 0.68 | 0.998251 |
Target: 5'- aCGAG-GCACagGCACCCcCUCUGa -3' miRNA: 3'- -GUUCuCGUG--UGUGGGuGAGAUa -5' |
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MIMAT0003714 | ebv-miR-BART16 | -45.8 | NC_007605.1 | - | 168207 | 0.68 | 0.998839 |
Target: 5'- aCGAGGGCAgACACCaccuGCUCg-- -3' miRNA: 3'- -GUUCUCGUgUGUGGg---UGAGaua -5' |
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MIMAT0003714 | ebv-miR-BART16 | -45.8 | NC_007605.1 | - | 40114 | 0.67 | 0.999042 |
Target: 5'- -cAGAGCAagcggacCACGCCCAUUCg-- -3' miRNA: 3'- guUCUCGU-------GUGUGGGUGAGaua -5' |
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MIMAT0003714 | ebv-miR-BART16 | -45.8 | NC_007605.1 | + | 137056 | 0.67 | 0.999063 |
Target: 5'- --cGGGCACACaggcccccgaaGCCCACUgUGUg -3' miRNA: 3'- guuCUCGUGUG-----------UGGGUGAgAUA- -5' |
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MIMAT0003714 | ebv-miR-BART16 | -45.8 | NC_007605.1 | - | 55657 | 0.67 | 0.999403 |
Target: 5'- gGAGAGCAUAgACCaC-CUCUAUc -3' miRNA: 3'- gUUCUCGUGUgUGG-GuGAGAUA- -5' |
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MIMAT0003714 | ebv-miR-BART16 | -45.8 | NC_007605.1 | + | 101833 | 0.67 | 0.999403 |
Target: 5'- aCGAGAGCGCcucugGCGCCCucgGCUCc-- -3' miRNA: 3'- -GUUCUCGUG-----UGUGGG---UGAGaua -5' |
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MIMAT0003714 | ebv-miR-BART16 | -45.8 | NC_007605.1 | - | 163476 | 0.67 | 0.999403 |
Target: 5'- --uGAGCuACGCACCCGCcaugCUGg -3' miRNA: 3'- guuCUCG-UGUGUGGGUGa---GAUa -5' |
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MIMAT0003714 | ebv-miR-BART16 | -45.8 | NC_007605.1 | + | 8865 | 0.67 | 0.999528 |
Target: 5'- gGAGAGUuCACuGCCCGCUCc-- -3' miRNA: 3'- gUUCUCGuGUG-UGGGUGAGaua -5' |
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MIMAT0003714 | ebv-miR-BART16 | -45.8 | NC_007605.1 | + | 126986 | 0.67 | 0.99963 |
Target: 5'- cCAAGAGaaGCAuCGCCCACUCc-- -3' miRNA: 3'- -GUUCUCg-UGU-GUGGGUGAGaua -5' |
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MIMAT0003714 | ebv-miR-BART16 | -45.8 | NC_007605.1 | - | 66603 | 0.67 | 0.99963 |
Target: 5'- --cGGGCACACaccACCCAC-CUGg -3' miRNA: 3'- guuCUCGUGUG---UGGGUGaGAUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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