miRNA display CGI


Results 1 - 5 of 5 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003715 ebv-miR-BART17-5p -47.2 NC_007605.1 - 155361 0.67 0.996912
Target:  5'- uCCUgcagaUAU-CCUGCGUCCUCUg -3'
miRNA:   3'- -GGAac---AUAcGGACGCAGGAGAa -5'
MIMAT0003715 ebv-miR-BART17-5p -47.2 NC_007605.1 + 68787 0.68 0.993951
Target:  5'- cCCUgGgg-GCCUGUGUCUUCUg -3'
miRNA:   3'- -GGAaCauaCGGACGCAGGAGAa -5'
MIMAT0003715 ebv-miR-BART17-5p -47.2 NC_007605.1 - 166874 0.68 0.993951
Target:  5'- aCUUuUAUGCCUGC-UCCUCa- -3'
miRNA:   3'- gGAAcAUACGGACGcAGGAGaa -5'
MIMAT0003715 ebv-miR-BART17-5p -47.2 NC_007605.1 + 139809 0.79 0.65204
Target:  5'- uCCUUGUAUGCCUGgUGUCCcCUUa -3'
miRNA:   3'- -GGAACAUACGGAC-GCAGGaGAA- -5'
MIMAT0003715 ebv-miR-BART17-5p -47.2 NC_007605.1 - 139969 1.02 0.0346
Target:  5'- aCCUUGUAUGCCUGCGUCCUCUUa -3'
miRNA:   3'- -GGAACAUACGGACGCAGGAGAA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.