Results 1 - 20 of 148 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | + | 60244 | 0.66 | 0.998564 |
Target: 5'- cUGAGGGccGGCACCAGGag-GCGc -3' miRNA: 3'- -AUUCCC--CUGUGGUCCguaUGUu -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 26088 | 0.66 | 0.998245 |
Target: 5'- cAGGGGGGCGgggauggcCCGGGUggACAGa -3' miRNA: 3'- aUUCCCCUGU--------GGUCCGuaUGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | + | 38914 | 0.66 | 0.998832 |
Target: 5'- --cGGGGGCAgCGGGCGgcCGc -3' miRNA: 3'- auuCCCCUGUgGUCCGUauGUu -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 29156 | 0.66 | 0.998245 |
Target: 5'- cAGGGGGGCGgggauggcCCGGGUggACAGa -3' miRNA: 3'- aUUCCCCUGU--------GGUCCGuaUGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | + | 150546 | 0.66 | 0.998245 |
Target: 5'- gAGGGGGAauagcguCCAGGCAUcuuuCAGg -3' miRNA: 3'- aUUCCCCUgu-----GGUCCGUAu---GUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | + | 153927 | 0.66 | 0.998245 |
Target: 5'- gGAGGGGGC-CaGGGCcUGCAGg -3' miRNA: 3'- aUUCCCCUGuGgUCCGuAUGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 13286 | 0.66 | 0.998245 |
Target: 5'- aGAGGGGACGCCuaGGGUc----- -3' miRNA: 3'- aUUCCCCUGUGG--UCCGuauguu -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 13812 | 0.66 | 0.998245 |
Target: 5'- cAGGGGGGCGgggauggcCCGGGUggACAGa -3' miRNA: 3'- aUUCCCCUGU--------GGUCCGuaUGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 19424 | 0.66 | 0.998245 |
Target: 5'- aGAGGGGACGCCuaGGGUc----- -3' miRNA: 3'- aUUCCCCUGUGG--UCCGuauguu -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 22493 | 0.66 | 0.998245 |
Target: 5'- aGAGGGGACGCCuaGGGUc----- -3' miRNA: 3'- aUUCCCCUGUGG--UCCGuauguu -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 16881 | 0.66 | 0.998245 |
Target: 5'- cAGGGGGGCGgggauggcCCGGGUggACAGa -3' miRNA: 3'- aUUCCCCUGU--------GGUCCGuaUGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | + | 60571 | 0.66 | 0.998564 |
Target: 5'- -cGGcGGGugGCCAGGCccaACGAc -3' miRNA: 3'- auUC-CCCugUGGUCCGua-UGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 23019 | 0.66 | 0.998245 |
Target: 5'- cAGGGGGGCGgggauggcCCGGGUggACAGa -3' miRNA: 3'- aUUCCCCUGU--------GGUCCGuaUGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | + | 81989 | 0.66 | 0.999056 |
Target: 5'- -cAGGGGGCACCcguGGCcccGUugAGg -3' miRNA: 3'- auUCCCCUGUGGu--CCG---UAugUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 16355 | 0.66 | 0.998245 |
Target: 5'- aGAGGGGACGCCuaGGGUc----- -3' miRNA: 3'- aUUCCCCUGUGG--UCCGuauguu -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 25562 | 0.66 | 0.998245 |
Target: 5'- aGAGGGGACGCCuaGGGUc----- -3' miRNA: 3'- aUUCCCCUGUGG--UCCGuauguu -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 28631 | 0.66 | 0.998245 |
Target: 5'- aGAGGGGACGCCuaGGGUc----- -3' miRNA: 3'- aUUCCCCUGUGG--UCCGuauguu -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | + | 103546 | 0.66 | 0.998245 |
Target: 5'- -cGGGGGAgAUCAuGGCAUccgGCAAg -3' miRNA: 3'- auUCCCCUgUGGU-CCGUA---UGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | + | 166767 | 0.66 | 0.999056 |
Target: 5'- -cAGGGGugGCUAGGCcUGg-- -3' miRNA: 3'- auUCCCCugUGGUCCGuAUguu -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 19950 | 0.66 | 0.998245 |
Target: 5'- cAGGGGGGCGgggauggcCCGGGUggACAGa -3' miRNA: 3'- aUUCCCCUGU--------GGUCCGuaUGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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