miRNA display CGI


Results 1 - 20 of 148 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 140005 1.01 0.038025
Target:  5'- cUAAGGGGACACCAGGCAUACAAg -3'
miRNA:   3'- -AUUCCCCUGUGGUCCGUAUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 136015 0.85 0.345953
Target:  5'- gUGAGGGGA-GCCAGGCGUGCAGa -3'
miRNA:   3'- -AUUCCCCUgUGGUCCGUAUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 130240 0.79 0.62573
Target:  5'- aAGGGGGGCACUAaGCAUGCAGg -3'
miRNA:   3'- aUUCCCCUGUGGUcCGUAUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 3583 0.77 0.759996
Target:  5'- --cGGGGACGCCAGGuCGUugAc -3'
miRNA:   3'- auuCCCCUGUGGUCC-GUAugUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 82072 0.76 0.770571
Target:  5'- aAAGGGGGCACCAGGgA-ACAu -3'
miRNA:   3'- aUUCCCCUGUGGUCCgUaUGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 58691 0.73 0.911147
Target:  5'- --uGGGGGCACCAGGggcccaGUACAc -3'
miRNA:   3'- auuCCCCUGUGGUCCg-----UAUGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 80477 0.72 0.945911
Target:  5'- ---uGGGuuACCAGGCAUACAGc -3'
miRNA:   3'- auucCCCugUGGUCCGUAUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 169002 0.72 0.945911
Target:  5'- aGAGGGGccCACCGGGCccGCGAc -3'
miRNA:   3'- aUUCCCCu-GUGGUCCGuaUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 52245 0.72 0.945911
Target:  5'- -cGGGGGcgaaGCACC-GGCGUGCGAg -3'
miRNA:   3'- auUCCCC----UGUGGuCCGUAUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 134928 0.71 0.959329
Target:  5'- aGAGGGGGCGa-AGGCGUGCc- -3'
miRNA:   3'- aUUCCCCUGUggUCCGUAUGuu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 139774 0.7 0.970259
Target:  5'- cUAAGaGGACG-CAGGCAUACAAg -3'
miRNA:   3'- -AUUCcCCUGUgGUCCGUAUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 17109 0.7 0.970259
Target:  5'- cUGGGGGGAC-CgGGGCAguggACAGg -3'
miRNA:   3'- -AUUCCCCUGuGgUCCGUa---UGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 20177 0.7 0.970259
Target:  5'- cUGGGGGGAC-CgGGGCAguggACAGg -3'
miRNA:   3'- -AUUCCCCUGuGgUCCGUa---UGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 14040 0.7 0.970259
Target:  5'- cUGGGGGGAC-CgGGGCAguggACAGg -3'
miRNA:   3'- -AUUCCCCUGuGgUCCGUa---UGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 26315 0.7 0.970259
Target:  5'- cUGGGGGGAC-CgGGGCAguggACAGg -3'
miRNA:   3'- -AUUCCCCUGuGgUCCGUa---UGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 23246 0.7 0.970259
Target:  5'- cUGGGGGGAC-CgGGGCAguggACAGg -3'
miRNA:   3'- -AUUCCCCUGuGgUCCGUa---UGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 32453 0.7 0.970259
Target:  5'- cUGGGGGGAC-CgGGGCAguggACAGg -3'
miRNA:   3'- -AUUCCCCUGuGgUCCGUa---UGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 29384 0.7 0.970259
Target:  5'- cUGGGGGGAC-CgGGGCAguggACAGg -3'
miRNA:   3'- -AUUCCCCUGuGgUCCGUa---UGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 56227 0.7 0.973383
Target:  5'- aAGGGGGGCACUgAGGCG-GCGGg -3'
miRNA:   3'- aUUCCCCUGUGG-UCCGUaUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 141809 0.7 0.978907
Target:  5'- cGGGGGGugGCC-GGC-UGCAGc -3'
miRNA:   3'- aUUCCCCugUGGuCCGuAUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.