miRNA display CGI


Results 1 - 20 of 148 are showing below:
Show page: 


<< Previous Page | Next Page >>
Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 2857 0.69 0.985343
Target:  5'- -uGGGGGccaucaaGCACCAGGCAcuugACAc -3'
miRNA:   3'- auUCCCC-------UGUGGUCCGUa---UGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 3583 0.77 0.759996
Target:  5'- --cGGGGACGCCAGGuCGUugAc -3'
miRNA:   3'- auuCCCCUGUGGUCC-GUAugUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 5914 0.68 0.992904
Target:  5'- cUAGGGGGACAauaUCAGGCuaaauucaguguAUGCAu -3'
miRNA:   3'- -AUUCCCCUGU---GGUCCG------------UAUGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 10610 0.67 0.997869
Target:  5'- cAAGGGGACAagUguGGCAgguggGCGGg -3'
miRNA:   3'- aUUCCCCUGU--GguCCGUa----UGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 12244 0.69 0.987345
Target:  5'- gGAGGGGAgCAgCAGGguUGCu- -3'
miRNA:   3'- aUUCCCCU-GUgGUCCguAUGuu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 12949 0.67 0.996912
Target:  5'- cGAGGaGGCGCCAGGC--GCGGg -3'
miRNA:   3'- aUUCCcCUGUGGUCCGuaUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 13286 0.66 0.998245
Target:  5'- aGAGGGGACGCCuaGGGUc----- -3'
miRNA:   3'- aUUCCCCUGUGG--UCCGuauguu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 13812 0.66 0.998245
Target:  5'- cAGGGGGGCGgggauggcCCGGGUggACAGa -3'
miRNA:   3'- aUUCCCCUGU--------GGUCCGuaUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 14040 0.7 0.970259
Target:  5'- cUGGGGGGAC-CgGGGCAguggACAGg -3'
miRNA:   3'- -AUUCCCCUGuGgUCCGUa---UGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 15313 0.69 0.987345
Target:  5'- gGAGGGGAgCAgCAGGguUGCu- -3'
miRNA:   3'- aUUCCCCU-GUgGUCCguAUGuu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 16018 0.67 0.996912
Target:  5'- cGAGGaGGCGCCAGGC--GCGGg -3'
miRNA:   3'- aUUCCcCUGUGGUCCGuaUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 16355 0.66 0.998245
Target:  5'- aGAGGGGACGCCuaGGGUc----- -3'
miRNA:   3'- aUUCCCCUGUGG--UCCGuauguu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 16881 0.66 0.998245
Target:  5'- cAGGGGGGCGgggauggcCCGGGUggACAGa -3'
miRNA:   3'- aUUCCCCUGU--------GGUCCGuaUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 17109 0.7 0.970259
Target:  5'- cUGGGGGGAC-CgGGGCAguggACAGg -3'
miRNA:   3'- -AUUCCCCUGuGgUCCGUa---UGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 18382 0.69 0.987345
Target:  5'- gGAGGGGAgCAgCAGGguUGCu- -3'
miRNA:   3'- aUUCCCCU-GUgGUCCguAUGuu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 19087 0.67 0.996912
Target:  5'- cGAGGaGGCGCCAGGC--GCGGg -3'
miRNA:   3'- aUUCCcCUGUGGUCCGuaUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 19424 0.66 0.998245
Target:  5'- aGAGGGGACGCCuaGGGUc----- -3'
miRNA:   3'- aUUCCCCUGUGG--UCCGuauguu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 19950 0.66 0.998245
Target:  5'- cAGGGGGGCGgggauggcCCGGGUggACAGa -3'
miRNA:   3'- aUUCCCCUGU--------GGUCCGuaUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 20177 0.7 0.970259
Target:  5'- cUGGGGGGAC-CgGGGCAguggACAGg -3'
miRNA:   3'- -AUUCCCCUGuGgUCCGUa---UGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 21451 0.69 0.987345
Target:  5'- gGAGGGGAgCAgCAGGguUGCu- -3'
miRNA:   3'- aUUCCCCU-GUgGUCCguAUGuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.