Results 1 - 9 of 9 are showing below:
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| Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| MIMAT0003717 | ebv-miR-BART18 | -41.6 | NC_007605.1 | - | 38083 | 0.68 | 0.999999 |
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Target: 5'- aUGcAUAGG-AGUGCGAACaUGg -3' miRNA: 3'- gACaUAUCCuUCACGCUUGaAC- -5' |
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| MIMAT0003717 | ebv-miR-BART18 | -41.6 | NC_007605.1 | + | 57786 | 0.68 | 0.999999 |
|
Target: 5'- aCUGgaggGGGAAG-GCGAGCUg- -3' miRNA: 3'- -GACaua-UCCUUCaCGCUUGAac -5' |
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| MIMAT0003717 | ebv-miR-BART18 | -41.6 | NC_007605.1 | - | 88258 | 0.68 | 0.999998 |
|
Target: 5'- -aGUGgcGGAcugcaGGUGUGAACUUGg -3' miRNA: 3'- gaCAUauCCU-----UCACGCUUGAAC- -5' |
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| MIMAT0003717 | ebv-miR-BART18 | -41.6 | NC_007605.1 | - | 88376 | 0.72 | 0.999546 |
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Target: 5'- gCUGUGUGGGcgacauggaacucAAGUGUGAACUUu -3' miRNA: 3'- -GACAUAUCC-------------UUCACGCUUGAAc -5' |
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| MIMAT0003717 | ebv-miR-BART18 | -41.6 | NC_007605.1 | - | 130758 | 0.7 | 0.999967 |
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Target: 5'- uUGcUAUGGGAGGUGgGGGCUg- -3' miRNA: 3'- gAC-AUAUCCUUCACgCUUGAac -5' |
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| MIMAT0003717 | ebv-miR-BART18 | -41.6 | NC_007605.1 | - | 132151 | 0.69 | 0.999988 |
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Target: 5'- -----aAGGAGGUGCGGACUc- -3' miRNA: 3'- gacauaUCCUUCACGCUUGAac -5' |
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| MIMAT0003717 | ebv-miR-BART18 | -41.6 | NC_007605.1 | - | 146010 | 1.03 | 0.114868 |
|
Target: 5'- aCUGUAUAGGAAGUGCGAACUUGa -3' miRNA: 3'- -GACAUAUCCUUCACGCUUGAAC- -5' |
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| MIMAT0003717 | ebv-miR-BART18 | -41.6 | NC_007605.1 | + | 158608 | 0.7 | 0.999967 |
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Target: 5'- -gGUGgcGGGggGUGCGGGCUg- -3' miRNA: 3'- gaCAUa-UCCuuCACGCUUGAac -5' |
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| MIMAT0003717 | ebv-miR-BART18 | -41.6 | NC_007605.1 | + | 167238 | 0.66 | 1 |
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Target: 5'- gUGUGUAGGAGGgGUGggUUc- -3' miRNA: 3'- gACAUAUCCUUCaCGCuuGAac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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