miRNA display CGI


Results 1 - 20 of 29 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003718 ebv-miR-BART19 -40.2 NC_007605.1 - 10724 0.66 1
Target:  5'- gGCggUCUCuaguGGCGAAUAGAGCAa -3'
miRNA:   3'- -CGuaAGGGu---UCGUUUGUUUUGU- -5'
MIMAT0003718 ebv-miR-BART19 -40.2 NC_007605.1 - 153766 0.67 1
Target:  5'- gGCGgaugCCCGGGUAAAgGAGGCGg -3'
miRNA:   3'- -CGUaa--GGGUUCGUUUgUUUUGU- -5'
MIMAT0003718 ebv-miR-BART19 -40.2 NC_007605.1 - 148657 0.66 1
Target:  5'- ---cUCCCGAGUAAcCAAAGCGc -3'
miRNA:   3'- cguaAGGGUUCGUUuGUUUUGU- -5'
MIMAT0003718 ebv-miR-BART19 -40.2 NC_007605.1 - 148606 0.69 1
Target:  5'- aGCcgUCCCuGGCAAguuACAGAGCc -3'
miRNA:   3'- -CGuaAGGGuUCGUU---UGUUUUGu -5'
MIMAT0003718 ebv-miR-BART19 -40.2 NC_007605.1 - 138799 0.68 1
Target:  5'- aGUAUUCUgAGGCAGACAuuuuGCAc -3'
miRNA:   3'- -CGUAAGGgUUCGUUUGUuu--UGU- -5'
MIMAT0003718 ebv-miR-BART19 -40.2 NC_007605.1 - 133560 0.66 1
Target:  5'- gGCGUUCCCGgugAGCcGAguGAACGg -3'
miRNA:   3'- -CGUAAGGGU---UCGuUUguUUUGU- -5'
MIMAT0003718 ebv-miR-BART19 -40.2 NC_007605.1 - 104932 0.66 1
Target:  5'- gGCGagaCCCgAGGCAGACAAGGCc -3'
miRNA:   3'- -CGUaa-GGG-UUCGUUUGUUUUGu -5'
MIMAT0003718 ebv-miR-BART19 -40.2 NC_007605.1 - 101267 0.67 1
Target:  5'- ----aCCCAGGUAAACAAGAUu -3'
miRNA:   3'- cguaaGGGUUCGUUUGUUUUGu -5'
MIMAT0003718 ebv-miR-BART19 -40.2 NC_007605.1 - 99990 0.66 1
Target:  5'- cGCAUgCCCAGGCuaauggucaAGAUGAGGCAg -3'
miRNA:   3'- -CGUAaGGGUUCG---------UUUGUUUUGU- -5'
MIMAT0003718 ebv-miR-BART19 -40.2 NC_007605.1 - 89531 0.67 1
Target:  5'- gGUGUUUCCAAGCcuguGCAGAGCu -3'
miRNA:   3'- -CGUAAGGGUUCGuu--UGUUUUGu -5'
MIMAT0003718 ebv-miR-BART19 -40.2 NC_007605.1 - 40224 0.69 1
Target:  5'- cCAggaCCAGGCAAGCGGGGCAc -3'
miRNA:   3'- cGUaagGGUUCGUUUGUUUUGU- -5'
MIMAT0003718 ebv-miR-BART19 -40.2 NC_007605.1 + 10573 0.66 1
Target:  5'- cCGggCCCAGGCcuuGCAGGGCAg -3'
miRNA:   3'- cGUaaGGGUUCGuu-UGUUUUGU- -5'
MIMAT0003718 ebv-miR-BART19 -40.2 NC_007605.1 + 90140 0.66 1
Target:  5'- cGCAUUCCUccagcuGCGAGCAAGGgAa -3'
miRNA:   3'- -CGUAAGGGuu----CGUUUGUUUUgU- -5'
MIMAT0003718 ebv-miR-BART19 -40.2 NC_007605.1 - 4851 0.69 1
Target:  5'- -gGUUCCCAgcAGCAGGCGcAGCGa -3'
miRNA:   3'- cgUAAGGGU--UCGUUUGUuUUGU- -5'
MIMAT0003718 ebv-miR-BART19 -40.2 NC_007605.1 + 167461 0.66 1
Target:  5'- gGCAUUCCC-AGUAAAUGGAGgGa -3'
miRNA:   3'- -CGUAAGGGuUCGUUUGUUUUgU- -5'
MIMAT0003718 ebv-miR-BART19 -40.2 NC_007605.1 + 90523 0.69 1
Target:  5'- aGCAUUCUCAggAGCAGGCugagGGGCAg -3'
miRNA:   3'- -CGUAAGGGU--UCGUUUGu---UUUGU- -5'
MIMAT0003718 ebv-miR-BART19 -40.2 NC_007605.1 + 105348 0.66 1
Target:  5'- gGCGUUCCCAcgggggcgccccuGGCAGAgAGguGGCAg -3'
miRNA:   3'- -CGUAAGGGU-------------UCGUUUgUU--UUGU- -5'
MIMAT0003718 ebv-miR-BART19 -40.2 NC_007605.1 + 111777 0.66 1
Target:  5'- aGgGUUCCUGaggcAGCAGGCAGAGCu -3'
miRNA:   3'- -CgUAAGGGU----UCGUUUGUUUUGu -5'
MIMAT0003718 ebv-miR-BART19 -40.2 NC_007605.1 + 148067 0.69 1
Target:  5'- aCAUUCCCc-GCAAACAuGACAu -3'
miRNA:   3'- cGUAAGGGuuCGUUUGUuUUGU- -5'
MIMAT0003718 ebv-miR-BART19 -40.2 NC_007605.1 + 130583 0.66 1
Target:  5'- aGCAacaCCAGGCAAaaaacACAGAGCAa -3'
miRNA:   3'- -CGUaagGGUUCGUU-----UGUUUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.