Results 1 - 9 of 9 are showing below:
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| Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| MIMAT0003719 | ebv-miR-BART20-5p | -45 | NC_007605.1 | + | 75439 | 0.66 | 0.999879 |
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Target: 5'- aGGAgGUGAGGugGUGCUUGUg-- -3' miRNA: 3'- -CCU-UACUUCugUACGGACGaug -5' |
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| MIMAT0003719 | ebv-miR-BART20-5p | -45 | NC_007605.1 | - | 82744 | 0.66 | 0.99991 |
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Target: 5'- gGGGGccUGAGGGCAggGCCUGCc-- -3' miRNA: 3'- -CCUU--ACUUCUGUa-CGGACGaug -5' |
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| MIMAT0003719 | ebv-miR-BART20-5p | -45 | NC_007605.1 | - | 86700 | 0.68 | 0.999084 |
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Target: 5'- ---cUGAAGACGcUGCCUgGCUGCc -3' miRNA: 3'- ccuuACUUCUGU-ACGGA-CGAUG- -5' |
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| MIMAT0003719 | ebv-miR-BART20-5p | -45 | NC_007605.1 | - | 92137 | 0.67 | 0.999811 |
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Target: 5'- gGGAAUGAuGGGgGUGCCUcucacaccgaggcccGCUACu -3' miRNA: 3'- -CCUUACU-UCUgUACGGA---------------CGAUG- -5' |
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| MIMAT0003719 | ebv-miR-BART20-5p | -45 | NC_007605.1 | - | 93774 | 0.7 | 0.995594 |
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Target: 5'- aGggUGAGGAgAgGCCUGCUGu -3' miRNA: 3'- cCuuACUUCUgUaCGGACGAUg -5' |
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| MIMAT0003719 | ebv-miR-BART20-5p | -45 | NC_007605.1 | - | 114161 | 0.7 | 0.993846 |
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Target: 5'- uGGGAcGggGugGUGCCUGgUAUg -3' miRNA: 3'- -CCUUaCuuCugUACGGACgAUG- -5' |
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| MIMAT0003719 | ebv-miR-BART20-5p | -45 | NC_007605.1 | - | 137227 | 0.71 | 0.988699 |
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Target: 5'- gGGggUGGAGGCugcGCCUgaGCUGCc -3' miRNA: 3'- -CCuuACUUCUGua-CGGA--CGAUG- -5' |
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| MIMAT0003719 | ebv-miR-BART20-5p | -45 | NC_007605.1 | + | 148223 | 0.71 | 0.988699 |
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Target: 5'- uGGcAUGAAGGCAcaGCCUGUUACc -3' miRNA: 3'- -CCuUACUUCUGUa-CGGACGAUG- -5' |
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| MIMAT0003719 | ebv-miR-BART20-5p | -45 | NC_007605.1 | - | 148383 | 1.04 | 0.04103 |
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Target: 5'- aGGAAUGAAGACAUGCCUGCUACa -3' miRNA: 3'- -CCUUACUUCUGUACGGACGAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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