miRNA display CGI


Results 1 - 9 of 9 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003719 ebv-miR-BART20-5p -45 NC_007605.1 + 75439 0.66 0.999879
Target:  5'- aGGAgGUGAGGugGUGCUUGUg-- -3'
miRNA:   3'- -CCU-UACUUCugUACGGACGaug -5'
MIMAT0003719 ebv-miR-BART20-5p -45 NC_007605.1 - 82744 0.66 0.99991
Target:  5'- gGGGGccUGAGGGCAggGCCUGCc-- -3'
miRNA:   3'- -CCUU--ACUUCUGUa-CGGACGaug -5'
MIMAT0003719 ebv-miR-BART20-5p -45 NC_007605.1 - 86700 0.68 0.999084
Target:  5'- ---cUGAAGACGcUGCCUgGCUGCc -3'
miRNA:   3'- ccuuACUUCUGU-ACGGA-CGAUG- -5'
MIMAT0003719 ebv-miR-BART20-5p -45 NC_007605.1 - 92137 0.67 0.999811
Target:  5'- gGGAAUGAuGGGgGUGCCUcucacaccgaggcccGCUACu -3'
miRNA:   3'- -CCUUACU-UCUgUACGGA---------------CGAUG- -5'
MIMAT0003719 ebv-miR-BART20-5p -45 NC_007605.1 - 93774 0.7 0.995594
Target:  5'- aGggUGAGGAgAgGCCUGCUGu -3'
miRNA:   3'- cCuuACUUCUgUaCGGACGAUg -5'
MIMAT0003719 ebv-miR-BART20-5p -45 NC_007605.1 - 114161 0.7 0.993846
Target:  5'- uGGGAcGggGugGUGCCUGgUAUg -3'
miRNA:   3'- -CCUUaCuuCugUACGGACgAUG- -5'
MIMAT0003719 ebv-miR-BART20-5p -45 NC_007605.1 - 137227 0.71 0.988699
Target:  5'- gGGggUGGAGGCugcGCCUgaGCUGCc -3'
miRNA:   3'- -CCuuACUUCUGua-CGGA--CGAUG- -5'
MIMAT0003719 ebv-miR-BART20-5p -45 NC_007605.1 + 148223 0.71 0.988699
Target:  5'- uGGcAUGAAGGCAcaGCCUGUUACc -3'
miRNA:   3'- -CCuUACUUCUGUa-CGGACGAUG- -5'
MIMAT0003719 ebv-miR-BART20-5p -45 NC_007605.1 - 148383 1.04 0.04103
Target:  5'- aGGAAUGAAGACAUGCCUGCUACa -3'
miRNA:   3'- -CCUUACUUCUGUACGGACGAUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.