miRNA display CGI


Results 1 - 7 of 7 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003720 ebv-miR-BART20-3p -46.7 NC_007605.1 + 85451 0.66 0.999249
Target:  5'- ---uGCGGGCUGgcaGCCUUCAc- -3'
miRNA:   3'- ccauUGUCCGACa--CGGAAGUac -5'
MIMAT0003720 ebv-miR-BART20-3p -46.7 NC_007605.1 - 154162 0.68 0.99391
Target:  5'- uGG-AGCGGGCcaagGCCUUCGUGg -3'
miRNA:   3'- -CCaUUGUCCGaca-CGGAAGUAC- -5'
MIMAT0003720 ebv-miR-BART20-3p -46.7 NC_007605.1 - 122457 0.69 0.990386
Target:  5'- uGGUGaACGGGCUGgugGCCUUUg-- -3'
miRNA:   3'- -CCAU-UGUCCGACa--CGGAAGuac -5'
MIMAT0003720 ebv-miR-BART20-3p -46.7 NC_007605.1 + 159156 0.71 0.973135
Target:  5'- aGGUGuACAGGCUGUGCg-UCAg- -3'
miRNA:   3'- -CCAU-UGUCCGACACGgaAGUac -5'
MIMAT0003720 ebv-miR-BART20-3p -46.7 NC_007605.1 + 55041 0.71 0.966551
Target:  5'- cGGUGGCGGGCUuaaaGCCUUCGg- -3'
miRNA:   3'- -CCAUUGUCCGAca--CGGAAGUac -5'
MIMAT0003720 ebv-miR-BART20-3p -46.7 NC_007605.1 + 65852 0.77 0.768005
Target:  5'- aGGUGACGGGCUGUucgacGCCUUCu-- -3'
miRNA:   3'- -CCAUUGUCCGACA-----CGGAAGuac -5'
MIMAT0003720 ebv-miR-BART20-3p -46.7 NC_007605.1 - 148419 1 0.045841
Target:  5'- uGGUAACAGGCUGUGCCUUCAUGc -3'
miRNA:   3'- -CCAUUGUCCGACACGGAAGUAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.