miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
100 3' -62.4 AC_000006.1 + 21914 1.11 0.000066
Target:  5'- cAGCAAGCGCGGCCGGCUCACCCUGCCg -3'
miRNA:   3'- -UCGUUCGCGCCGGCCGAGUGGGACGG- -5'
100 3' -62.4 AC_000006.1 + 9984 0.79 0.025803
Target:  5'- cGGCcAGCGCuggguGGCCGGCgCGCCCgggGCCa -3'
miRNA:   3'- -UCGuUCGCG-----CCGGCCGaGUGGGa--CGG- -5'
100 3' -62.4 AC_000006.1 + 23527 0.74 0.063584
Target:  5'- cAGCucGCGCcGCCGGCUCGCgCUcacgGCCu -3'
miRNA:   3'- -UCGuuCGCGcCGGCCGAGUGgGA----CGG- -5'
100 3' -62.4 AC_000006.1 + 14529 0.73 0.07339
Target:  5'- cGC-GGUGCGGCUGGUgCACUCUGaCCa -3'
miRNA:   3'- uCGuUCGCGCCGGCCGaGUGGGAC-GG- -5'
100 3' -62.4 AC_000006.1 + 19574 0.72 0.082264
Target:  5'- uGGC-GGCGCGGCgcgCGGCUCgcaucaugGCCCggcgGCCc -3'
miRNA:   3'- -UCGuUCGCGCCG---GCCGAG--------UGGGa---CGG- -5'
100 3' -62.4 AC_000006.1 + 26706 0.71 0.100308
Target:  5'- uGCccGCGgGGCCGGaacCGCCgCUGCCg -3'
miRNA:   3'- uCGuuCGCgCCGGCCga-GUGG-GACGG- -5'
100 3' -62.4 AC_000006.1 + 25048 0.71 0.109135
Target:  5'- uGGCcccGGGCGC-GCCGGC-CACCCagcgcugGCCg -3'
miRNA:   3'- -UCG---UUCGCGcCGGCCGaGUGGGa------CGG- -5'
100 3' -62.4 AC_000006.1 + 19523 0.71 0.112236
Target:  5'- cGGCGgcGGCgGCGGCC-GCUCGucugcgagUCCUGCCu -3'
miRNA:   3'- -UCGU--UCG-CGCCGGcCGAGU--------GGGACGG- -5'
100 3' -62.4 AC_000006.1 + 15470 0.7 0.118686
Target:  5'- uGCGAGcCGCGcGCCGcGC-CGCCaCUGCa -3'
miRNA:   3'- uCGUUC-GCGC-CGGC-CGaGUGG-GACGg -5'
100 3' -62.4 AC_000006.1 + 28812 0.7 0.12901
Target:  5'- uGGCcaccAGCGUGGaCCuGgUCACCCUGCa -3'
miRNA:   3'- -UCGu---UCGCGCC-GGcCgAGUGGGACGg -5'
100 3' -62.4 AC_000006.1 + 23397 0.7 0.12901
Target:  5'- aGGCGgccuccaaGGCGC-GCCGGCUCGgC-UGCCa -3'
miRNA:   3'- -UCGU--------UCGCGcCGGCCGAGUgGgACGG- -5'
100 3' -62.4 AC_000006.1 + 18254 0.7 0.132633
Target:  5'- cGCcGGCgGCGGUucaGGCcgCugCCUGCCa -3'
miRNA:   3'- uCGuUCG-CGCCGg--CCGa-GugGGACGG- -5'
100 3' -62.4 AC_000006.1 + 13126 0.69 0.156398
Target:  5'- cGGCAGG-GUGaGCCGGC-CGCgCUUGCUg -3'
miRNA:   3'- -UCGUUCgCGC-CGGCCGaGUG-GGACGG- -5'
100 3' -62.4 AC_000006.1 + 17671 0.68 0.17432
Target:  5'- cGCAucuGGcCGCGGCCGcuuCUCGCCCUucgGCg -3'
miRNA:   3'- uCGU---UC-GCGCCGGCc--GAGUGGGA---CGg -5'
100 3' -62.4 AC_000006.1 + 17546 0.68 0.179078
Target:  5'- aGGuCAAGgGUGGCgGGUUucauuaCACCCgugGCCa -3'
miRNA:   3'- -UC-GUUCgCGCCGgCCGA------GUGGGa--CGG- -5'
100 3' -62.4 AC_000006.1 + 15197 0.67 0.194049
Target:  5'- -aCAAGCGCGGgCGGaCUgcCACCgCcGCCg -3'
miRNA:   3'- ucGUUCGCGCCgGCC-GA--GUGG-GaCGG- -5'
100 3' -62.4 AC_000006.1 + 5060 0.67 0.194049
Target:  5'- gGGCGuccAGCGCGGCCaGCgUCAugUCCUuCCa -3'
miRNA:   3'- -UCGU---UCGCGCCGGcCG-AGU--GGGAcGG- -5'
100 3' -62.4 AC_000006.1 + 11513 0.67 0.199278
Target:  5'- cGUGAGCGCGaGCCGGCg-GCgCgaGCUg -3'
miRNA:   3'- uCGUUCGCGC-CGGCCGagUG-GgaCGG- -5'
100 3' -62.4 AC_000006.1 + 5941 0.67 0.20463
Target:  5'- gAGgAGGauuuGauGuuGGCUUGCCCUGCCg -3'
miRNA:   3'- -UCgUUCg---CgcCggCCGAGUGGGACGG- -5'
100 3' -62.4 AC_000006.1 + 10516 0.67 0.20463
Target:  5'- cGGCGAGCG-GGaCUuGgUCACCCcGCCg -3'
miRNA:   3'- -UCGUUCGCgCC-GGcCgAGUGGGaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.