miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
100 5' -52.9 AC_000006.1 + 26199 0.66 0.705028
Target:  5'- --cGCCCGGgaGAGC--UGCGGACUUa -3'
miRNA:   3'- ucuCGGGCCg-UUCGauACGUUUGAGg -5'
100 5' -52.9 AC_000006.1 + 23820 0.66 0.705028
Target:  5'- cGGGCUCGGCGAuGUUuaGCAGcgcCUCCc -3'
miRNA:   3'- uCUCGGGCCGUU-CGAuaCGUUu--GAGG- -5'
100 5' -52.9 AC_000006.1 + 5672 0.66 0.705028
Target:  5'- uGAGUaaGGCuGGCcAUGCAucaaugauACUCCg -3'
miRNA:   3'- uCUCGggCCGuUCGaUACGUu-------UGAGG- -5'
100 5' -52.9 AC_000006.1 + 5423 0.66 0.693541
Target:  5'- cGAGCCaGGUGAGCUcggGCu-GCUCg -3'
miRNA:   3'- uCUCGGgCCGUUCGAua-CGuuUGAGg -5'
100 5' -52.9 AC_000006.1 + 28757 0.66 0.693541
Target:  5'- --uGCUCGcGCAagGGCg--GCAGACUCUg -3'
miRNA:   3'- ucuCGGGC-CGU--UCGauaCGUUUGAGG- -5'
100 5' -52.9 AC_000006.1 + 23764 0.66 0.681986
Target:  5'- --cGUCaGGCAGGC-AUGCAAGauCUCCa -3'
miRNA:   3'- ucuCGGgCCGUUCGaUACGUUU--GAGG- -5'
100 5' -52.9 AC_000006.1 + 21762 0.66 0.65873
Target:  5'- --cGCCgCGGCGcgGGC---GCAGGCUCCc -3'
miRNA:   3'- ucuCGG-GCCGU--UCGauaCGUUUGAGG- -5'
100 5' -52.9 AC_000006.1 + 21910 0.67 0.647054
Target:  5'- --cGCCCaGCAAGCgcgGCcGGCUCa -3'
miRNA:   3'- ucuCGGGcCGUUCGauaCGuUUGAGg -5'
100 5' -52.9 AC_000006.1 + 14286 0.67 0.635362
Target:  5'- -cAGCCgaaGGCGAGCcaGUGCAcgcCUCCg -3'
miRNA:   3'- ucUCGGg--CCGUUCGa-UACGUuu-GAGG- -5'
100 5' -52.9 AC_000006.1 + 15884 0.67 0.635362
Target:  5'- -cGGCCCGGCAcGGCg--GUGGugUUCa -3'
miRNA:   3'- ucUCGGGCCGU-UCGauaCGUUugAGG- -5'
100 5' -52.9 AC_000006.1 + 32373 0.67 0.635362
Target:  5'- cGGGGCUCGGUGcGGCUGcUGCAAAUg-- -3'
miRNA:   3'- -UCUCGGGCCGU-UCGAU-ACGUUUGagg -5'
100 5' -52.9 AC_000006.1 + 15909 0.67 0.61198
Target:  5'- --cGCCCGGCGAGCgGUccucggucaggaGCAAGCguagCUa -3'
miRNA:   3'- ucuCGGGCCGUUCGaUA------------CGUUUGa---GG- -5'
100 5' -52.9 AC_000006.1 + 30818 0.67 0.600313
Target:  5'- cAGucUCCGGCGGGCg--GCGAACUUUc -3'
miRNA:   3'- -UCucGGGCCGUUCGauaCGUUUGAGG- -5'
100 5' -52.9 AC_000006.1 + 3263 0.68 0.565538
Target:  5'- uAGAGCCaguGGUAGGUUuuggGUAGGCUaCCa -3'
miRNA:   3'- -UCUCGGg--CCGUUCGAua--CGUUUGA-GG- -5'
100 5' -52.9 AC_000006.1 + 19635 0.68 0.531308
Target:  5'- cAGAGCUCgGGCGgcgccccauGGCgg-GCGuGCUCCg -3'
miRNA:   3'- -UCUCGGG-CCGU---------UCGauaCGUuUGAGG- -5'
100 5' -52.9 AC_000006.1 + 15593 0.69 0.497857
Target:  5'- aGGAGCCCGG-GAGCaggaGCAggUUCUu -3'
miRNA:   3'- -UCUCGGGCCgUUCGaua-CGUuuGAGG- -5'
100 5' -52.9 AC_000006.1 + 23488 0.7 0.444355
Target:  5'- cAGcGCCCGGCGcaGGCUcaGCAucAGCUCg -3'
miRNA:   3'- -UCuCGGGCCGU--UCGAuaCGU--UUGAGg -5'
100 5' -52.9 AC_000006.1 + 21949 0.98 0.005302
Target:  5'- cAGAGCCC-GCAAGCUAUGCAAACUCCc -3'
miRNA:   3'- -UCUCGGGcCGUUCGAUACGUUUGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.