miRNA display CGI


Results 1 - 9 of 9 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1002 3' -50.1 NC_000924.1 + 32392 0.66 0.956309
Target:  5'- aCga-CCUGAUgGAGCAGAucgaacguccggAUGGCAUUa -3'
miRNA:   3'- gGaagGGACUA-UUCGUCU------------UGCCGUAG- -5'
1002 3' -50.1 NC_000924.1 + 15429 0.66 0.93711
Target:  5'- uUCUUCCCUGGU-AGCAaacCGGUAa- -3'
miRNA:   3'- -GGAAGGGACUAuUCGUcuuGCCGUag -5'
1002 3' -50.1 NC_000924.1 + 19774 0.67 0.931583
Target:  5'- uCUUUCUCUGAUGaaGGCGuuACGGCu-- -3'
miRNA:   3'- -GGAAGGGACUAU--UCGUcuUGCCGuag -5'
1002 3' -50.1 NC_000924.1 + 5792 0.67 0.906526
Target:  5'- uCCgaaaUCCCUGA-AAGCAcAGCGGCu-- -3'
miRNA:   3'- -GGa---AGGGACUaUUCGUcUUGCCGuag -5'
1002 3' -50.1 NC_000924.1 + 50564 0.68 0.89953
Target:  5'- gCUUCCCggcGAUGAGCugcGGAU-GCGUCa -3'
miRNA:   3'- gGAAGGGa--CUAUUCGu--CUUGcCGUAG- -5'
1002 3' -50.1 NC_000924.1 + 53625 0.68 0.86791
Target:  5'- --aUCCCUGAcGGGCGGAccguucgcgagaaGCuGCGUCa -3'
miRNA:   3'- ggaAGGGACUaUUCGUCU-------------UGcCGUAG- -5'
1002 3' -50.1 NC_000924.1 + 57157 0.69 0.860363
Target:  5'- aUCUUCUgCUGGUcuGCAu-ACGGCAUCa -3'
miRNA:   3'- -GGAAGG-GACUAuuCGUcuUGCCGUAG- -5'
1002 3' -50.1 NC_000924.1 + 35561 0.69 0.860363
Target:  5'- aCCUUugacCCCUGAUAGaaaCGGAuCGGCAUa -3'
miRNA:   3'- -GGAA----GGGACUAUUc--GUCUuGCCGUAg -5'
1002 3' -50.1 NC_000924.1 + 7152 1.13 0.00193
Target:  5'- gCCUUCCCUGAUAAGCAGAACGGCAUCg -3'
miRNA:   3'- -GGAAGGGACUAUUCGUCUUGCCGUAG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.